Motif IL_43946.1 Version IL_43946.1 of this group appears in releases 0.7 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-6 | 4-5 | 4-11 | 5-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U63_001 | 1U63 | 0.5178 | 0 | B | 49 NT FRAGMENT OF MRNA FOR L1 | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | tSs | cWW | tsS | ||
| 2 | IL_2VPL_001 | 2VPL | 0.0000 | 0 | Kink-turn | B | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | ntSs | cWW | tsS | |
| 3 | IL_2HW8_001 | 2HW8 | 0.1131 | 0 | Kink-turn | B | 36-MER | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 22 | G | 23 | C | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | tSH | ntSs | cWW | tsS | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CGAGAAAC | 2 |
| GGAG*CGCGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GAGAAA | 2 |
| GA*GCGAAA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_43946.1 | Only in the parent motif |
|---|---|---|---|
| IL_93335.2 Compare | IL_2HW8_001, IL_2VPL_001, IL_1U63_001 | IL_2VPL_004, IL_1U63_003 |
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (2)
- Basepair signature
- cWW-tSH-tSS-tSS-R-R-R-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.26 | Max 0.53
Coloring options: