Motif IL_45262.1 Version IL_45262.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_062 | 2QBG | 0.4646 | 0 | B | LSU rRNA | G | 1651 | A | 1652 | G | 1653 | A | 1654 | A | 1655 | C | 1656 | * | G | 2004 | A | 2005 | C | 2006 | cWW | tHS | cWW |
| 2 | IL_1S72_059 | 1S72 | 0.1130 | 1 | 0 | LSU rRNA | G | 1728 | A | 1729 | C | 1731 | A | 1732 | A | 1733 | C | 1734 | * | G | 2045 | G | 2046 | C | 2047 | cWW | tHS | cWW |
| 3 | IL_3UXR_061 | 3UXR | 0.0000 | 0 | A | LSU rRNA | G | 1651 | A | 1652 | G | 1653 | A | 1654 | A | 1655 | C | 1656 | * | G | 2004 | A | 2005 | C | 2006 | cWW | tHS | cWW |
| 4 | IL_2XZM_048 | 2XZM | 0.1003 | 0 | A | SSU rRNA | G | 963 | G | 964 | G | 965 | A | 966 | U | 967 | C | 968 | * | G | 992 | U | 993 | C | 994 | cWW | ncWw | cWW |
| 5 | IL_2ZJR_060 | 2ZJR | 0.2630 | 0 | X | LSU rRNA | G | 1668 | A | 1669 | G | 1670 | A | 1671 | A | 1672 | C | 1673 | * | G | 1987 | A | 1988 | C | 1989 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAAC*GAC | 3 |
| GAGCAAC*GGC | 1 |
| GGGAUC*GUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*A | 3 |
| AGCAA*G | 1 |
| GGAU*U | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_45262.1 | Only in the parent motif |
|---|---|---|---|
| IL_19771.1 Compare | IL_2QBG_062, IL_1S72_059, IL_2ZJR_060 | IL_3UXR_061, IL_2XZM_048 | IL_3PYO_059 |
| IL_97713.1 Compare | IL_2XZM_048 | IL_3UXR_061, IL_2QBG_062, IL_1S72_059, IL_2ZJR_060 | IL_3O30_050 |
Children motifs
| Child motif | Common motif instances | Only in IL_45262.1 | Only in the child motif |
|---|---|---|---|
| IL_45262.2 Compare | IL_2XZM_048, IL_2QBG_062, IL_1S72_059, IL_2ZJR_060 | IL_3UXR_061 | IL_3V2F_061 |
- Annotations
-
- (5)
- Basepair signature
- 09_cWW----tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.24 | Max 0.53
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