#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 81-85-6
1 IL_8KAL_0088KAL0.15252ARNA (98-MER)C40A41A42G43U45*A26G27G29ncWWcWW
2 IL_6AEG_0016AEG0.09162ARNA (95-MER)C40A41A42G43U45*A26G27G29cWWcWW
3 IL_5VW1_0015VW10.08272CsgRNAC40A41A42G43U45*A26G27G29cWWcWW
4 IL_7Z4D_0017Z4D0.09332AsgRNAC40A41A42G43U45*A26G27G29cWWcWW
5 IL_7ZO1_0017ZO10.04622ACD34 sgRNAC40A41A42G43U45*A26G27G29cWWcWW
6 IL_7QQP_0017QQP0.04352AAAVS1 sgRNAC40A41A42G43U45*A26G27G29cWWcWW
7 IL_7QQX_0017QQX0.00002AFANCF sgRNAC40A41A42G43U45*A26G27G29cWWcWW
8 IL_7QR0_0017QR00.03552ATRAC sgRNAC40A41A42G43U45*A26G27G29cWWcWW
9 IL_5FQ5_0015FQ50.04032ASGRNAC40A41A42G43U45*A26G27G29cWWcWW
10 IL_5B2T_0015B2T0.04102AGuide RNAC40A41A42G43U45*A26G27G29cWWcWW
11 IL_7QR8_0017QR80.04852APTPRC sgRNAC40A41A42G43U45*A26G27G29cWWcWW
12 IL_4ZT0_0034ZT00.11262Dsingle-guide RNAC40A41A42G43U45*A26G27G29cWWcWW
13 IL_5F9R_0015F9R0.12072ARNA (116-MER)C58A59A60G61U63*A26G27G29cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAGUU*AGAG13
Non-Watson-Crick part of the motif
SequenceCounts
AAGU*GA13

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (13)
  • Basepair signature
    cWW-L-R-L-cWW-L
    Heat map statistics
    Min 0.04 | Avg 0.09 | Max 0.20
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