Motif IL_46284.1 Version IL_46284.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-3 | 1-9 | 2-8 | 3-7 | 4-9 | 5-8 | 6-7 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V88_408 | 4V88 | 0.0000 | 1 | C-loop with extra cWW pair | A6 | SSU rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | C | 448 | * | G | 458 | A | 460 | G | 461 | cSH | cWW | tWH | cWS | ncWW | cWW | |
2 | IL_5TBW_062 | 5TBW | 0.9325 | 1 | 1 | LSU rRNA | G | 1500 | U | 1501 | C | 1502 | A | 1503 | A | 1504 | C | 1505 | * | G | 1513 | A | 1515 | C | 1516 | cWW | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCAAUC*GGAG | 1 |
GUCAAC*GGAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAAU*GA | 1 |
UCAA*GA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-loop with extra cWW pair (1)
- (1)
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Heat map statistics
- Min 0.93 | Avg 0.47 | Max 0.93
Coloring options: