Motif IL_46637.1 Version IL_46637.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PCJ_004 | 4PCJ | 0.5841 | 0 | Major groove intercalation | A | trCUG-3('5) | U | 25 | A | 26 | U | 27 | * | A | 11 | G | 12 | cWW | cWW | ||
| 2 | IL_5VCI_004 | 5VCI | 0.5493 | 0 | Major groove intercalation | B+A | RNA (12-mer) | U | 2 | A | 3 | U | 4 | * | A | 11 | G | 12 | cWW | cWW | ||
| 3 | IL_1U6B_010 | 1U6B | 0.5436 | 0 | Major groove intercalation | B | 197-MER | U | 160 | A | 161 | U | 162 | * | A | 150 | G | 151 | cWW | cWW | ||
| 4 | IL_5DCV_005 | 5DCV | 0.5167 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 48 | G | 49 | cWW | cWW | ||
| 5 | IL_9E6Q_088 | 9E6Q | 0.0971 | 0 | Major groove platform (H) | 1 | LSU rRNA | U | 2694 | G | 2695 | G | 2696 | * | C | 2621 | G | 2622 | cWW | nchH | cWW | |
| 6 | IL_8OI5_107 | 8OI5 | 0.0895 | 0 | Major groove platform (H) | 1 | LSU rRNA | U | 2921 | G | 2922 | G | 2923 | * | C | 2848 | G | 2849 | cWW | nchH | cWW | |
| 7 | IL_8P9A_334 | 8P9A | 0.0787 | 0 | Major groove platform (H) | AR | LSU rRNA | U | 2949 | G | 2950 | G | 2951 | * | C | 2876 | G | 2877 | cWW | cWW | ||
| 8 | IL_8GLP_146 | 8GLP | 0.0392 | 0 | Major groove platform (H) | L5 | LSU rRNA | U | 4526 | G | 4527 | G | 4528 | * | C | 4453 | G | 4454 | cWW | cWW | ||
| 9 | IL_9AXU_098 | 9AXU | 0.0000 | 0 | 2 | LSU rRNA | U | 3044 | G | 3045 | G | 3046 | * | C | 2971 | G | 2972 | cWW | nchH | cWW | ||
| 10 | IL_4V9F_086 | 4V9F | 0.0572 | 0 | Major groove platform | 0 | LSU rRNA | U | 2615 | G | 2616 | G | 2617 | * | C | 2542 | G | 2543 | cWW | nchH | cWW | |
| 11 | IL_4WF9_094 | 4WF9 | 0.0959 | 0 | Major groove platform | X | LSU rRNA | U | 2607 | G | 2608 | G | 2609 | * | C | 2534 | G | 2535 | cWW | chH | cWW | |
| 12 | IL_9DFE_096 | 9DFE | 0.1152 | 0 | Major groove platform (H) | 1A | LSU rRNA | U | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW | |
| 13 | IL_7A0S_088 | 7A0S | 0.1516 | 0 | Major groove platform | X | LSU rRNA | U | 2559 | G | 2560 | G | 2561 | * | C | 2486 | G | 2487 | cWW | chH | cWW | |
| 14 | IL_8OI5_104 | 8OI5 | 0.1973 | 0 | Major groove platform (H) | 1 | LSU rRNA | U | 2798 | U | 2799 | G | 2800 | * | U | 2834 | G | 2835 | cWW | cWW | ||
| 15 | IL_8P9A_331 | 8P9A | 0.2211 | 0 | Major groove platform (H) | AR | LSU rRNA | U | 2826 | U | 2827 | G | 2828 | * | U | 2862 | G | 2863 | cWW | cWW | ||
| 16 | IL_9E6Q_085 | 9E6Q | 0.2408 | 0 | Major groove platform (H) | 1 | LSU rRNA | PSU | 2571 | C | 2572 | G | 2573 | * | PSU | 2607 | OMG | 2608 | cWW | cHH | cWW | |
| 17 | IL_4V9F_083 | 4V9F | 0.1832 | 0 | Major groove platform | 0 | LSU rRNA | U | 2492 | C | 2493 | G | 2494 | * | U | 2528 | G | 2529 | cWW | cHH | cWW | |
| 18 | IL_8GLP_313 | 8GLP | 0.3960 | 0 | L5 | LSU rRNA | PSU | 4403 | U | 4404 | G | 4405 | * | U | 4439 | G | 4440 | cWW | cWW | |||
| 19 | IL_8B0X_186 | 8B0X | 0.3537 | 0 | Major groove platform (H) | a | LSU rRNA | PSU | 2584 | G | 2585 | G | 2586 | * | C | 2511 | G | 2512 | cWW | chH | cWW | |
| 20 | IL_8B0X_185 | 8B0X | 0.4489 | 0 | Major groove platform (H) | a | LSU rRNA | PSU | 2461 | G | 2462 | A | 2463 | * | U | 2497 | G | 2498 | cWW | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*CG | 9 |
| UAU*AG | 4 |
| UUG*UG | 2 |
| (PSU)CG*(PSU)(OMG) | 1 |
| UCG*UG | 1 |
| (PSU)UG*UG | 1 |
| (PSU)GG*CG | 1 |
| (PSU)GA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 11 |
| A* | 4 |
| U* | 3 |
| C* | 2 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (H) (10)
- Major groove intercalation (4)
- Major groove platform (4)
- (2)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.04 | Avg 0.33 | Max 0.68
Coloring options: