Motif IL_47475.1 Version IL_47475.1 of this group appears in releases 1.9 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3U5F_086 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | U | 1656 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW | |
2 | IL_1S72_093 | 1S72 | 0.3335 | 3 | Bulged stacked bases (H) | 0 | LSU rRNA | A | 2746 | G | 2750 | * | U | 2732 | U | 2733 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUG*UA | 1 |
ACGUG*UU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U* | 1 |
CGU* | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_47475.1 | Only in the parent motif |
---|---|---|---|
IL_39674.1 Compare | IL_3U5F_086, IL_1S72_093 | IL_1KXK_003, IL_3V2F_082 |
Children motifs
Child motif | Common motif instances | Only in IL_47475.1 | Only in the child motif |
---|---|---|---|
IL_47875.1 Compare | IL_3U5F_086 | IL_1S72_093 | IL_2AW7_029, IL_1FJG_022 |
IL_63253.1 Compare | IL_1S72_093 | IL_3U5F_086 |
- Annotations
-
- Bulged stacked bases (H) (1)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.33 | Avg 0.17 | Max 0.33
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