Motif IL_48918.2 Version IL_48918.2 of this group appears in releases 1.1 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 5-6 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_052 | 4IOA | 0.8535 | 1 | Kink-turn (H) | X | LSU rRNA | U | 1426 | G | 1427 | G | 1428 | A | 1429 | G | 1430 | * | C | 1598 | G | 1599 | U | 1600 | G | 1602 | A | 1603 | A | 1604 | A | 1605 | cWW | tSH | ntSs | cWW | ||
| 2 | IL_4B5R_002 | 4B5R | 0.0000 | 1 | Kink-turn (H) | A | SAM-I riboswitch | G | 17 | G | 18 | G | 19 | A | 20 | G | 21 | * | C | 31 | G | 32 | A | 33 | G | 35 | A | 36 | A | 37 | C | 38 | cWW | tSH | tSH | tSs | tHS | cWW |
| 3 | IL_3UMY_004 | 3UMY | 0.1456 | 1 | Kink-turn (H) | B | LSU rRNA | G | 2155 | G | 2156 | G | 2157 | A | 2158 | G | 2159 | * | C | 2129 | U | 2130 | G | 2131 | G | 2133 | A | 2134 | A | 2135 | C | 2136 | cWW | tSH | tSH | ntSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAG*CGUUGAAA | 1 |
| GGGAG*CGAAGAAC | 1 |
| GGGAG*CUGUGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*GUUGAA | 1 |
| GGA*GAAGAA | 1 |
| GGA*UGUGAA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_48918.2 | Only in the parent motif |
|---|---|---|---|
| IL_48918.1 Compare | IL_3UMY_004, IL_4B5R_002 | IL_4IOA_052 | IL_2ZJR_051 |
Children motifs
| Child motif | Common motif instances | Only in IL_48918.2 | Only in the child motif |
|---|---|---|---|
| IL_48918.3 Compare | IL_3UMY_004, IL_4IOA_052, IL_4B5R_002 | IL_4BW0_001 |
- Annotations
-
- Kink-turn (H) (3)
- Basepair signature
- cWW-tSH-tSH-tHS-tSS-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.42 | Max 0.91
Coloring options: