Motif IL_48918.1 Version IL_48918.1 of this group appears in releases 1.0 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 5-6 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_051 | 2ZJR | 0.8326 | 1 | Kink-turn (H) | X | LSU rRNA | U | 1426 | G | 1427 | G | 1428 | A | 1429 | G | 1430 | * | C | 1598 | G | 1599 | U | 1600 | U | 1601 | A | 1603 | A | 1604 | A | 1605 | cWW | tSH | ntSH | cWW | ||
| 2 | IL_4B5R_002 | 4B5R | 0.0000 | 1 | Kink-turn (H) | A | SAM-I riboswitch | G | 17 | G | 18 | G | 19 | A | 20 | G | 21 | * | C | 31 | G | 32 | A | 33 | G | 35 | A | 36 | A | 37 | C | 38 | cWW | tSH | tSH | tSs | tHS | cWW |
| 3 | IL_3UMY_004 | 3UMY | 0.1456 | 1 | Kink-turn (H) | B | LSU rRNA | G | 2155 | G | 2156 | G | 2157 | A | 2158 | G | 2159 | * | C | 2129 | U | 2130 | G | 2131 | G | 2133 | A | 2134 | A | 2135 | C | 2136 | cWW | tSH | tSH | ntSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAG*CGUUGAAA | 1 |
| GGGAG*CGAAGAAC | 1 |
| GGGAG*CUGUGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*GUUGAA | 1 |
| GGA*GAAGAA | 1 |
| GGA*UGUGAA | 1 |
Release history
| Release | 1.0 |
|---|---|
| Date | 2013-03-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_48918.1 | Only in the parent motif |
|---|---|---|---|
| IL_47968.1 Compare | IL_3UMY_004 | IL_4B5R_002, IL_2ZJR_051 | |
| IL_82831.2 Compare | IL_2ZJR_051 | IL_3UMY_004, IL_4B5R_002 | IL_2AW7_038 |
Children motifs
| Child motif | Common motif instances | Only in IL_48918.1 | Only in the child motif |
|---|---|---|---|
| IL_48918.2 Compare | IL_3UMY_004, IL_4B5R_002 | IL_2ZJR_051 | IL_4IOA_052 |
- Annotations
-
- Kink-turn (H) (3)
- Basepair signature
- cWW-tSH-tSH-tHS-tSS-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.42 | Max 0.90
Coloring options: