Motif IL_96952.1 Version IL_96952.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_003 | 3U5F | 0.8450 | 1 | 6 | 18S rRNA | U | 466 | G | 467 | C | 469 | A | 470 | A | 471 | * | U | 37 | C | 38 | A | 39 | A | 40 | A | 41 | cWW | tSH | cWW | cWW | |
| 2 | IL_4CUX_006 | 4CUX | 0.6010 | 3 | 2 | 18S RRNA | G | 57 | U | 58 | C | 59 | G | 63 | U | 64 | * | A | 86 | C | 87 | U | 88 | G | 89 | C | 90 | cWW | ncWW | ncWW | cWW | |
| 3 | IL_4CUX_047 | 4CUX | 0.0000 | 0 | 2 | 18S RRNA | G | 885 | U | 886 | A | 887 | U | 888 | U | 889 | * | A | 923 | A | 924 | G | 925 | A | 926 | C | 927 | cWW | ncWW | ncWW | ncWW | |
| 4 | IL_4BPP_046 | 4BPP | 0.2803 | 0 | A | 18S RRNA | A | 901 | G | 902 | G | 903 | A | 904 | C | 905 | * | G | 863 | U | 864 | A | 865 | U | 866 | U | 867 | cWW | cWWa | cWW | cWW | |
| 5 | IL_1VW3_089 | 1VW3 | 0.2888 | 0 | A | 21S ribosomal RNA | A | 2978 | U | 2979 | A | 2980 | U | 2981 | U | 3002 | * | A | 3007 | U | 3008 | A | 3009 | U | 3010 | U | 3011 | cWW | cWw | ncwW | cWW | |
| 6 | IL_4CUX_026 | 4CUX | 0.7350 | 1 | 2 | 18S RRNA | C | 479 | G | 480 | A | 481 | U | 482 | A | 483 | * | U | 504 | A | 505 | U | 507 | U | 508 | G | 509 | ncWW | ncWW | ncWW | ||
| 7 | IL_4CUX_004 | 4CUX | 0.8875 | 1 | 2 | 18S RRNA | U | 37 | C | 38 | A | 39 | A | 40 | A | 41 | * | U | 466 | G | 467 | C | 469 | A | 470 | A | 471 | cWW | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGACAA*UCAAA | 1 |
| GUCUAAGU*ACUGC | 1 |
| GUAUU*AAGAC | 1 |
| AGGAC*GUAUU | 1 |
| AUAUU*AUAUU | 1 |
| CGAUA*UAAUUG | 1 |
| UCAAA*UGACAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACA*CAA | 1 |
| UCUAAG*CUG | 1 |
| UAU*AGA | 1 |
| GGA*UAU | 1 |
| UAU*UAU | 1 |
| GAU*AAUU | 1 |
| CAA*GACA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_96952.1 | Only in the parent motif |
|---|---|---|---|
| IL_97509.2 Compare | IL_4BPP_046, IL_1VW3_089, IL_3U5F_003 | IL_4CUX_026, IL_4CUX_004, IL_4CUX_006, IL_4CUX_047 |
Children motifs
| Child motif | Common motif instances | Only in IL_96952.1 | Only in the child motif |
|---|---|---|---|
| IL_49203.1 Compare | IL_4CUX_026, IL_4CUX_004, IL_4BPP_046, IL_3U5F_003, IL_1VW3_089 | IL_4CUX_006, IL_4CUX_047 | IL_1VX2_070, IL_1VX6_023, IL_3J7A_081, IL_1VWW_147, IL_3J7A_002, IL_1VX6_082, IL_1VX6_080, IL_1VWW_135, IL_1VX2_077 |
| IL_81965.1 Compare | IL_4CUX_006, IL_4CUX_047 | IL_4CUX_026, IL_4CUX_004, IL_4BPP_046, IL_3U5F_003, IL_1VW3_089 | IL_4BPP_028, IL_2AW7_058, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_1VX2_035, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1VX2_078, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_3J7A_061, IL_4BPP_090, IL_2A64_005, IL_1VW3_083, IL_2A64_006, IL_1VX6_113, IL_3IWN_002, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_1VWW_092, IL_1VWW_098, IL_1VWW_077, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072 |
- Annotations
-
- (7)
- Basepair signature
- cWW-L-R-R-L-cWW-cWW
- Heat map statistics
- Min 0.28 | Avg 0.65 | Max 1.22
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