Motif IL_49460.1 Version IL_49460.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-9 | 5-8 | 5-9 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_074 | 5TBW | 0.7942 | 1 | 1 | LSU rRNA | A | 1883 | A | 1884 | U | 1885 | A | 1887 | U | 1888 | G | 1889 | * | C | 2346 | U | 2347 | A | 2348 | U | 2349 | cWW | tHS | cWW | |||
| 2 | IL_3NDB_002 | 3NDB | 0.8199 | 1 | M | SRP RNA | G | 247 | G | 248 | G | 249 | U | 251 | G | 252 | C | 253 | * | G | 128 | U | 129 | C | 130 | C | 131 | cWW | ncWS | cWW | |||
| 3 | IL_7A0S_104 | 7A0S | 0.6796 | 0 | Y | 5S rRNA | G | 51 | G | 52 | G | 53 | U | 54 | C | 55 | G | 56 | * | C | 32 | C | 33 | C | 34 | C | 35 | cWW | ncBW | cWW | |||
| 4 | IL_5J7L_351 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | C | 2806 | U | 2807 | G | 2808 | A | 2809 | A | 2810 | G | 2811 | * | C | 2889 | G | 2890 | U | 2891 | G | 2892 | cWW | cwW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUAAUG*CUAU | 1 |
| GGGGUGC*GUCC | 1 |
| GGGUCG*CCCC | 1 |
| CUGAAG*CGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAU*UA | 1 |
| GGGUG*UC | 1 |
| GGUC*CC | 1 |
| UGAA*GU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-R-L-L-cWW
- Heat map statistics
- Min 0.46 | Avg 0.50 | Max 0.82
Coloring options: