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Motif IL_50676.1 Version IL_50676.1 of this group appears in releases 3.3 to 3.7

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_1QBP_0021QBP0.89380Tandem non-canonical cWW pairsA+BRNA (15-mer)U7U8C9G10*U22U23C24G25cWWcWWncWWcWW
2 IL_4ERD_0024ERD0.89560Tandem non-canonical cWW pairsD+CRNA (22-mer)U127U128C141G142*U127U128C141G142cWWcWWcWWcWW
3 IL_1IHA_0011IHA0.86660Tandem non-canonical cWW pairsB+ARNA (9-mer)U3U4C5G6*U3U4C5G6cWWcWWcWWcWW
4 IL_1ICG_0011ICG0.86830Tandem non-canonical cWW pairsB+ARNA (9-mer)U3U4C5G6*U3U4C5G6cWWcWWcWWcWW
5 IL_5TBW_0435TBW0.81032Other IL1 LSU rRNAU1034G1035A1036C1037*G1013U1014U1015G1018cWWntWHncWWcWW
6 IL_2YGH_0042YGH0.00002Pseudoknot (H)A SAM-I riboswitchG82A83A84A85*U64U67G68C69cWWcWW
7 IL_2YGH_0082YGH0.00002A SAM-I riboswitchG82||||8_554A83||||8_554A84||||8_554A85||||8_554*U64||||8_554U67||||8_554G68||||8_554C69||||8_554cWWcWW
8 IL_5FJC_0045FJC0.06982PseudoknotA SAM-I riboswitchG82A83A84A85*U64U67G68C69cWWcWW
9 IL_4AOB_0044AOB0.16232PseudoknotA SAM-I riboswitchG82A83A84A85*U64U67G68C69cWWcWW
10 IL_4AOB_0094AOB0.16232A SAM-I riboswitchG82||||7_555A83||||7_555A84||||7_555A85||||7_555*U64||||7_555U67||||7_555G68||||7_555C69||||7_555cWWcWW
11 IL_4KQY_0114KQY0.24582A SAM-I riboswitchG106||||4_555G107||||4_555A108||||4_555A109||||4_555*U85||||4_555A88||||4_555G89||||4_555C90||||4_555cWWcWW
12 IL_4KQY_0064KQY0.24582PseudoknotA SAM-I riboswitchG106G107A108A109*U85A88G89C90cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAA*UCCUGC5
UUCG*UUCG4
GGAA*UCCAGC2
UGAC*GUUCCG1
Non-Watson-Crick part of the motif
SequenceCounts
AA*CCUG5
UC*UC4
GA*CCAG2
GA*UUCC1

Release history

Release3.33.43.53.63.7
Date2018-03-082018-04-062018-05-042018-06-012018-06-29
StatusNew id, 2 parentsExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (4)
  • (3)
  • Pseudoknot (3)
  • Pseudoknot (H) (1)
  • Other IL (1)
    • Basepair signature
    cWW-L-R-cWW-cWW
    Heat map statistics
    Min 0.03 | Avg 0.54 | Max 0.95
    Help

    Coloring options:

    IL_1QBP_002:IL_1QBP_002 = 0IL_1QBP_002:IL_4ERD_002 = 0.1842IL_1QBP_002:IL_1IHA_001 = 0.1587IL_1QBP_002:IL_1ICG_001 = 0.167IL_1QBP_002:IL_5TBW_043 = 0.7474IL_1QBP_002:IL_2YGH_004 = 0.8938IL_1QBP_002:IL_2YGH_008 = 0.8938IL_1QBP_002:IL_5FJC_004 = 0.9136IL_1QBP_002:IL_4AOB_004 = 0.9502IL_1QBP_002:IL_4AOB_009 = 0.9502IL_1QBP_002:IL_4KQY_011 = 0.9443IL_1QBP_002:IL_4KQY_006 = 0.9443IL_4ERD_002:IL_1QBP_002 = 0.1842IL_4ERD_002:IL_4ERD_002 = 0IL_4ERD_002:IL_1IHA_001 = 0.1461IL_4ERD_002:IL_1ICG_001 = 0.1472IL_4ERD_002:IL_5TBW_043 = 0.7314IL_4ERD_002:IL_2YGH_004 = 0.8956IL_4ERD_002:IL_2YGH_008 = 0.8956IL_4ERD_002:IL_5FJC_004 = 0.911IL_4ERD_002:IL_4AOB_004 = 0.9392IL_4ERD_002:IL_4AOB_009 = 0.9392IL_4ERD_002:IL_4KQY_011 = 0.9407IL_4ERD_002:IL_4KQY_006 = 0.9407IL_1IHA_001:IL_1QBP_002 = 0.1587IL_1IHA_001:IL_4ERD_002 = 0.1461IL_1IHA_001:IL_1IHA_001 = 0IL_1IHA_001:IL_1ICG_001 = 0.0288IL_1IHA_001:IL_5TBW_043 = 0.6845IL_1IHA_001:IL_2YGH_004 = 0.8666IL_1IHA_001:IL_2YGH_008 = 0.8666IL_1IHA_001:IL_5FJC_004 = 0.8867IL_1IHA_001:IL_4AOB_004 = 0.9261IL_1IHA_001:IL_4AOB_009 = 0.9261IL_1IHA_001:IL_4KQY_011 = 0.9284IL_1IHA_001:IL_4KQY_006 = 0.9284IL_1ICG_001:IL_1QBP_002 = 0.167IL_1ICG_001:IL_4ERD_002 = 0.1472IL_1ICG_001:IL_1IHA_001 = 0.0288IL_1ICG_001:IL_1ICG_001 = 0IL_1ICG_001:IL_5TBW_043 = 0.6831IL_1ICG_001:IL_2YGH_004 = 0.8683IL_1ICG_001:IL_2YGH_008 = 0.8683IL_1ICG_001:IL_5FJC_004 = 0.8889IL_1ICG_001:IL_4AOB_004 = 0.9279IL_1ICG_001:IL_4AOB_009 = 0.9279IL_1ICG_001:IL_4KQY_011 = 0.9327IL_1ICG_001:IL_4KQY_006 = 0.9327IL_5TBW_043:IL_1QBP_002 = 0.7474IL_5TBW_043:IL_4ERD_002 = 0.7314IL_5TBW_043:IL_1IHA_001 = 0.6845IL_5TBW_043:IL_1ICG_001 = 0.6831IL_5TBW_043:IL_5TBW_043 = 0IL_5TBW_043:IL_2YGH_004 = 0.8103IL_5TBW_043:IL_2YGH_008 = 0.8103IL_5TBW_043:IL_5FJC_004 = 0.8165IL_5TBW_043:IL_4AOB_004 = 0.8565IL_5TBW_043:IL_4AOB_009 = 0.8565IL_5TBW_043:IL_4KQY_011 = 0.9408IL_5TBW_043:IL_4KQY_006 = 0.9408IL_2YGH_004:IL_1QBP_002 = 0.8938IL_2YGH_004:IL_4ERD_002 = 0.8956IL_2YGH_004:IL_1IHA_001 = 0.8666IL_2YGH_004:IL_1ICG_001 = 0.8683IL_2YGH_004:IL_5TBW_043 = 0.8103IL_2YGH_004:IL_2YGH_004 = 0IL_2YGH_004:IL_2YGH_008 = 0IL_2YGH_004:IL_5FJC_004 = 0.0698IL_2YGH_004:IL_4AOB_004 = 0.1623IL_2YGH_004:IL_4AOB_009 = 0.1623IL_2YGH_004:IL_4KQY_011 = 0.2458IL_2YGH_004:IL_4KQY_006 = 0.2458IL_2YGH_008:IL_1QBP_002 = 0.8938IL_2YGH_008:IL_4ERD_002 = 0.8956IL_2YGH_008:IL_1IHA_001 = 0.8666IL_2YGH_008:IL_1ICG_001 = 0.8683IL_2YGH_008:IL_5TBW_043 = 0.8103IL_2YGH_008:IL_2YGH_004 = 0IL_2YGH_008:IL_2YGH_008 = 0IL_2YGH_008:IL_5FJC_004 = 0.0698IL_2YGH_008:IL_4AOB_004 = 0.1623IL_2YGH_008:IL_4AOB_009 = 0.1623IL_2YGH_008:IL_4KQY_011 = 0.2458IL_2YGH_008:IL_4KQY_006 = 0.2458IL_5FJC_004:IL_1QBP_002 = 0.9136IL_5FJC_004:IL_4ERD_002 = 0.911IL_5FJC_004:IL_1IHA_001 = 0.8867IL_5FJC_004:IL_1ICG_001 = 0.8889IL_5FJC_004:IL_5TBW_043 = 0.8165IL_5FJC_004:IL_2YGH_004 = 0.0698IL_5FJC_004:IL_2YGH_008 = 0.0698IL_5FJC_004:IL_5FJC_004 = 0IL_5FJC_004:IL_4AOB_004 = 0.1502IL_5FJC_004:IL_4AOB_009 = 0.1502IL_5FJC_004:IL_4KQY_011 = 0.249IL_5FJC_004:IL_4KQY_006 = 0.249IL_4AOB_004:IL_1QBP_002 = 0.9502IL_4AOB_004:IL_4ERD_002 = 0.9392IL_4AOB_004:IL_1IHA_001 = 0.9261IL_4AOB_004:IL_1ICG_001 = 0.9279IL_4AOB_004:IL_5TBW_043 = 0.8565IL_4AOB_004:IL_2YGH_004 = 0.1623IL_4AOB_004:IL_2YGH_008 = 0.1623IL_4AOB_004:IL_5FJC_004 = 0.1502IL_4AOB_004:IL_4AOB_004 = 0IL_4AOB_004:IL_4AOB_009 = 0IL_4AOB_004:IL_4KQY_011 = 0.2364IL_4AOB_004:IL_4KQY_006 = 0.2364IL_4AOB_009:IL_1QBP_002 = 0.9502IL_4AOB_009:IL_4ERD_002 = 0.9392IL_4AOB_009:IL_1IHA_001 = 0.9261IL_4AOB_009:IL_1ICG_001 = 0.9279IL_4AOB_009:IL_5TBW_043 = 0.8565IL_4AOB_009:IL_2YGH_004 = 0.1623IL_4AOB_009:IL_2YGH_008 = 0.1623IL_4AOB_009:IL_5FJC_004 = 0.1502IL_4AOB_009:IL_4AOB_004 = 0IL_4AOB_009:IL_4AOB_009 = 0IL_4AOB_009:IL_4KQY_011 = 0.2364IL_4AOB_009:IL_4KQY_006 = 0.2364IL_4KQY_011:IL_1QBP_002 = 0.9443IL_4KQY_011:IL_4ERD_002 = 0.9407IL_4KQY_011:IL_1IHA_001 = 0.9284IL_4KQY_011:IL_1ICG_001 = 0.9327IL_4KQY_011:IL_5TBW_043 = 0.9408IL_4KQY_011:IL_2YGH_004 = 0.2458IL_4KQY_011:IL_2YGH_008 = 0.2458IL_4KQY_011:IL_5FJC_004 = 0.249IL_4KQY_011:IL_4AOB_004 = 0.2364IL_4KQY_011:IL_4AOB_009 = 0.2364IL_4KQY_011:IL_4KQY_011 = 0IL_4KQY_011:IL_4KQY_006 = 0IL_4KQY_006:IL_1QBP_002 = 0.9443IL_4KQY_006:IL_4ERD_002 = 0.9407IL_4KQY_006:IL_1IHA_001 = 0.9284IL_4KQY_006:IL_1ICG_001 = 0.9327IL_4KQY_006:IL_5TBW_043 = 0.9408IL_4KQY_006:IL_2YGH_004 = 0.2458IL_4KQY_006:IL_2YGH_008 = 0.2458IL_4KQY_006:IL_5FJC_004 = 0.249IL_4KQY_006:IL_4AOB_004 = 0.2364IL_4KQY_006:IL_4AOB_009 = 0.2364IL_4KQY_006:IL_4KQY_011 = 0IL_4KQY_006:IL_4KQY_006 = 0IL_1QBP_002IL_4ERD_002IL_1IHA_001IL_1ICG_001IL_5TBW_043IL_2YGH_004IL_2YGH_008IL_5FJC_004IL_4AOB_004IL_4AOB_009IL_4KQY_011IL_4KQY_006Discrepancy0.000.200.400.600.80
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