Motif IL_50676.2 Version IL_50676.2 of this group appears in releases 3.8 to 3.21
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1QBP_002 | 1QBP | 0.8938 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (15-mer) | U | 7 | U | 8 | C | 9 | G | 10 | * | U | 22 | U | 23 | C | 24 | G | 25 | cWW | cWW | ncWW | cWW |
| 2 | IL_422D_001 | 422D | 0.9080 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (12-mer) | U | 19 | U | 20 | C | 21 | G | 22 | * | U | 7 | U | 8 | C | 9 | G | 10 | cWW | cWW | cWW | cWW |
| 3 | IL_4ERD_002 | 4ERD | 0.8956 | 0 | Tandem non-canonical cWW pairs | D+C | RNA (22-mer) | U | 127 | U | 128 | C | 141 | G | 142 | * | U | 127 | U | 128 | C | 141 | G | 142 | cWW | cWW | cWW | cWW |
| 4 | IL_1IHA_001 | 1IHA | 0.8666 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW |
| 5 | IL_1ICG_001 | 1ICG | 0.8683 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW |
| 6 | IL_5TBW_043 | 5TBW | 0.8103 | 2 | Other IL | 1 | LSU rRNA | U | 1034 | G | 1035 | A | 1036 | C | 1037 | * | G | 1013 | U | 1014 | U | 1015 | G | 1018 | cWW | ntWH | ncWW | cWW |
| 7 | IL_2YGH_004 | 2YGH | 0.0000 | 2 | Pseudoknot (H) | A | SAM-I riboswitch | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | U | 67 | G | 68 | C | 69 | cWW | cWW | ||
| 8 | IL_2YGH_008 | 2YGH | 0.0000 | 2 | A | SAM-I riboswitch | G | 82||||8_554 | A | 83||||8_554 | A | 84||||8_554 | A | 85||||8_554 | * | U | 64||||8_554 | U | 67||||8_554 | G | 68||||8_554 | C | 69||||8_554 | cWW | cWW | |||
| 9 | IL_5FJC_004 | 5FJC | 0.0698 | 2 | Pseudoknot | A | SAM-I riboswitch | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | U | 67 | G | 68 | C | 69 | cWW | cWW | ||
| 10 | IL_4AOB_004 | 4AOB | 0.1623 | 2 | Pseudoknot | A | SAM-I riboswitch | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | U | 67 | G | 68 | C | 69 | cWW | cWW | ||
| 11 | IL_4AOB_009 | 4AOB | 0.1623 | 2 | A | SAM-I riboswitch | G | 82||||7_555 | A | 83||||7_555 | A | 84||||7_555 | A | 85||||7_555 | * | U | 64||||7_555 | U | 67||||7_555 | G | 68||||7_555 | C | 69||||7_555 | cWW | cWW | |||
| 12 | IL_4KQY_011 | 4KQY | 0.2458 | 2 | A | SAM-I riboswitch | G | 106||||4_555 | G | 107||||4_555 | A | 108||||4_555 | A | 109||||4_555 | * | U | 85||||4_555 | A | 88||||4_555 | G | 89||||4_555 | C | 90||||4_555 | cWW | cWW | |||
| 13 | IL_4KQY_006 | 4KQY | 0.2458 | 2 | Pseudoknot | A | SAM-I riboswitch | G | 106 | G | 107 | A | 108 | A | 109 | * | U | 85 | A | 88 | G | 89 | C | 90 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*UUCG | 5 |
| GAAA*UCCUGC | 5 |
| GGAA*UCCAGC | 2 |
| UGAC*GUUCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*UC | 5 |
| AA*CCUG | 5 |
| GA*CCAG | 2 |
| GA*UUCC | 1 |
Release history
| Release | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (5)
- (3)
- Pseudoknot (3)
- Pseudoknot (H) (1)
- Other IL (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.55 | Max 0.96
Coloring options: