#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 61-62-32-42-54-5
1 IL_4W90_0044W900.19570Major groove platform; stack outside cWWC cyclic di-AMP riboswitchC96G97U98C99*G58G59cWWntSHcWW
2 IL_4QK9_0034QK90.22470Major groove platform; stack outside cWWAC-di-AMP riboswitchC93G94U95C96*G43G44cWWntSH
3 IL_4QLM_0044QLM0.19100Major groove platform; stack outside cWWA cyclic di-AMP riboswitchC91G92U93C94*G39G40cWWtSHcWW
4 IL_5TBW_0765TBW0.22600Major groove platform; stack outside cWW1 LSU rRNAG1898G1899A1900A1901*U2336C2337cWWtSHcWW
5 IL_8C3A_0828C3A0.226101 LSU rRNAG1894G1895A1896A1897*U2314C2315cWWtSHcWW
6 IL_7A0S_0617A0S0.22650Major groove platform; stack outside cWWX LSU rRNAG1683G1684A1685A1686*U1976C1977cWWtSHcWW
7 IL_4V9F_0614V9F0.20920Major groove platform; stack outside cWW0 LSU rRNAG1744G1745A1746A1747*U2034C2035tSHcWW
8 IL_4WF9_0644WF90.20540Major groove platform; stack outside cWWX LSU rRNAG1710G1711A1712A1713*U2020C2021cWWtSHcWW
9 IL_5J7L_3065J7L0.18640Major groove platform; stack outside cWWDA LSU rRNAG1666G1667A1668A1669*U1993C1994tSHcWW
10 IL_8VTW_0658VTW0.151001A LSU rRNAG1666G1667A1668A1669*U1993C1994cWWtSHcWW
11 IL_1G1X_0041G1X0.14780Major groove platform; stack outside cWWJ+I16S RIBOSOMAL RNAU751G752A753C754*G654A655cWWtSHcWW
12 IL_1KUQ_0011KUQ0.12860Major groove platform; stack outside cWWB16S RIBOSOMAL RNA FRAGMENTU50G51A52C53*G18A19cWWncSHtSH
13 IL_5J7L_0315J7L0.07830Major groove platform; stack outside cWWAA SSU rRNAU751G752A753C754*G654A655cWWncSHtSH
14 IL_4LFB_0274LFB0.00000Major groove platform; stack outside cWWA SSU rRNAU751G752A753C754*G654A655cWWtSH
15 IL_1G1X_0011G1X0.10320Major groove platform; stack outside cWWE+D16S RIBOSOMAL RNAU751G752A753C754*G654A655cWWtSHcWW
16 IL_6CZR_1396CZR0.15500Major groove platform; stack outside cWW1a SSU rRNAU735G736A737C738*G638A639cWWcWW
17 IL_6N5P_0036N5P0.15750Major groove platform; stack outside cWWA cyclic di-AMP riboswitchC94G95A96C97*G44G45tSH
18 IL_4V88_4284V880.20060Major groove platform; stack outside cWWA6 SSU rRNAC962A963U964U965*A865G866cWWcWW
19 IL_8VTW_0498VTW0.180301A LSU rRNAG1310G1311U1312U1313*A1603C1604cWWcSHcWW
20 IL_4WF9_0494WF90.22780Major groove platform; stack outside cWWX LSU rRNAG1347U1348U1349U1350*A1647C1648cWW
21 IL_4V9F_0084V9F0.22950Major groove platform; stack outside cWW0 LSU rRNAC245G246A247A248*U265G266cWWtSHcWW
22 IL_5J7L_2905J7L0.25240Major groove platform; stack outside cWWDA LSU rRNAG1310G1311U1312U1313*A1603C1604cWWcWW
23 IL_4V9F_0504V9F0.26550Major groove platform; stack outside cWW0 LSU rRNAG1416G1417U1418U1419*A1678C1679cWWcWW
24 IL_7A0S_0467A0S0.28120Major groove platform; stack outside cWWX LSU rRNAG1323G1324U1325U1326*A1619C1620cWWcWW
25 IL_3D0U_0043D0U0.46100Major groove platform; stack outside cWWALysine Riboswitch RNAC35A36U37C38*G51G52cWWcSHcWW
26 IL_3DIL_0043DIL0.51540Major groove platform; stack outside cWWARNA (174-MER)C38A39U40C41*G54G55cWWcWW
27 IL_1NTA_0031NTA0.38560Major groove platform; stack outside cWWA+BRNA (22-mer) + RNA (18-mer)C15U16U17C18*G110G111cWWncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGAA*UC7
UGAC*GA6
GGUU*AC4
CGUC*GG3
CAUC*GG2
CGAC*GG1
CAUU*AG1
GUUU*AC1
CGAA*UG1
CUUC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
GA*15
GU*7
AU*3
UU*2

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform; stack outside cWW (24)
  • (3)
  • Basepair signature
    cWW-tSH-cWW-L
    Heat map statistics
    Min 0.06 | Avg 0.28 | Max 0.78
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