Motif IL_50694.3 Version IL_50694.3 of this group appears in releases 3.87 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	4-5
1	IL_4W90_004	4W90	0.1957	Major groove platform; stack outside cWW	C	cyclic di-AMP riboswitch	C	96	G	97	U	98	C	99	*	G	58	G	59	cWW			ntSH	cWW
2	IL_4QK9_003	4QK9	0.2247	Major groove platform; stack outside cWW	A	C-di-AMP riboswitch	C	93	G	94	U	95	C	96	*	G	43	G	44	cWW			ntSH	cWW
3	IL_4QLM_004	4QLM	0.1910	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	91	G	92	U	93	C	94	*	G	39	G	40	cWW			tSH	cWW
4	IL_5TBW_076	5TBW	0.2260	Major groove platform; stack outside cWW	1	LSU rRNA	G	1898	G	1899	A	1900	A	1901	*	U	2336	C	2337	cWW			tSH	cWW
5	IL_8C3A_082	8C3A	0.2261	Major groove platform; stack outside cWW	1	LSU rRNA	G	1894	G	1895	A	1896	A	1897	*	U	2314	C	2315	cWW			tSH	cWW
6	IL_7A0S_061	7A0S	0.2265	Major groove platform; stack outside cWW	X	LSU rRNA	G	1683	G	1684	A	1685	A	1686	*	U	1976	C	1977	cWW			tSH	cWW
7	IL_4V9F_061	4V9F	0.2092	Major groove platform; stack outside cWW	0	LSU rRNA	G	1744	G	1745	A	1746	A	1747	*	U	2034	C	2035	cWW			tSH	cWW
8	IL_4WF9_064	4WF9	0.2054	Major groove platform; stack outside cWW	X	LSU rRNA	G	1710	G	1711	A	1712	A	1713	*	U	2020	C	2021	cWW			tSH	cWW
9	IL_5J7L_306	5J7L	0.1864	Major groove platform; stack outside cWW	DA	LSU rRNA	G	1666	G	1667	A	1668	A	1669	*	U	1993	C	1994	cWW			tSH	cWW
10	IL_8VTW_065	8VTW	0.1510	Major groove platform; stack outside cWW	1A	LSU rRNA	G	1666	G	1667	A	1668	A	1669	*	U	1993	C	1994	cWW			tSH	cWW
11	IL_1G1X_004	1G1X	0.1478	Major groove platform; stack outside cWW	J+I	16S RIBOSOMAL RNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW		ncSH	tSH	cWW
12	IL_1KUQ_001	1KUQ	0.1286	Major groove platform; stack outside cWW	B	16S RIBOSOMAL RNA FRAGMENT	U	50	G	51	A	52	C	53	*	G	18	A	19	cWW		ncSH	tSH	cWW
13	IL_5J7L_031	5J7L	0.0783	Major groove platform; stack outside cWW	AA	SSU rRNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW		ncSH	tSH	cWW
14	IL_4LFB_027	4LFB	0.0000	Major groove platform; stack outside cWW	A	SSU rRNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW			tSH	cWW
15	IL_1G1X_001	1G1X	0.1032	Major groove platform; stack outside cWW	E+D	16S RIBOSOMAL RNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW		ncSH	tSH	cWW
16	IL_6CZR_139	6CZR	0.1550	Major groove platform; stack outside cWW	1a	SSU rRNA	U	735	G	736	A	737	C	738	*	G	638	A	639	cWW				cWW
17	IL_6N5P_003	6N5P	0.1575	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	94	G	95	A	96	C	97	*	G	44	G	45	cWW			tSH	cWW
18	IL_4V88_428	4V88	0.2006	Major groove platform; stack outside cWW	A6	SSU rRNA	C	962	A	963	U	964	U	965	*	A	865	G	866	cWW				cWW
19	IL_8VTW_049	8VTW	0.1803	Major groove platform; stack outside cWW	1A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW	cSH			cWW
20	IL_4WF9_049	4WF9	0.2278	Major groove platform; stack outside cWW	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	*	A	1647	C	1648	cWW				cWW
21	IL_4V9F_008	4V9F	0.2295	Major groove platform; stack outside cWW	0	LSU rRNA	C	245	G	246	A	247	A	248	*	U	265	G	266	cWW			tSH	cWW
22	IL_5J7L_290	5J7L	0.2524	Major groove platform; stack outside cWW	DA	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW				cWW
23	IL_4V9F_050	4V9F	0.2655	Major groove platform; stack outside cWW	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	*	A	1678	C	1679	cWW				cWW
24	IL_7A0S_046	7A0S	0.2812	Major groove platform; stack outside cWW	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	*	A	1619	C	1620	cWW				cWW
25	IL_3D0U_004	3D0U	0.4610	Major groove platform; stack outside cWW	A	Lysine Riboswitch RNA	C	35	A	36	U	37	C	38	*	G	51	G	52	cWW		cSH		cWW
26	IL_3DIL_004	3DIL	0.5154	Major groove platform; stack outside cWW	A	RNA (174-MER)	C	38	A	39	U	40	C	41	*	G	54	G	55	cWW				cWW
27	IL_1NTA_003	1NTA	0.3856	Major groove platform; stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	15	U	16	U	17	C	18	*	G	110	G	111	cWW		ncSH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAA*UC	7
UGAC*GA	6
GGUU*AC	4
CGUC*GG	3
CAUC*GG	2
CGAC*GG	1
CAUU*AG	1
GUUU*AC	1
CGAA*UG	1
CUUC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*	15
GU*	7
AU*	3
UU*	2

Release history

Release	3.87	3.88
Date	2024-08-14	2024-09-11
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform; stack outside cWW (27)
Basepair signature: cWW-tSH-cWW-L
Heat map statistics: Min 0.06 | Avg 0.28 | Max 0.78

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