#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 10 11 12 13 14break 15 16 17 18 19 20 211-212-203-196-713-1614-15
1 IL_8VTW_0398VTW0.457721A LSU rRNAC1124G1125A1126A1128A1129U1130A1132U1133C1135G1136G1137G1138G1139C1140*G1024G1025U1026A1027A1028A1029G1030cWWtSHtHHtWWcWW
2 IL_7A0S_0377A0S0.41942X LSU rRNAC1135G1136A1137A1139A1140U1141A1143U1144C1145G1146G1147G1148G1149C1150*G1035G1036U1037U1038A1039A1040G1041cWWtSHtHHtWWcWW
3 IL_4WF9_0404WF90.00003X LSU rRNAC1168G1169A1170A1172A1173G1175U1176A1177C1179G1180G1181G1182G1183C1184*G1068G1069A1070A1071A1072A1073G1074cWWtSHtHHcSHtWWcWW
4 IL_5J7L_2815J7L0.19643DA LSU rRNAG1124G1125A1126G1128A1129G1131U1132A1133C1135G1136G1137G1138G1139C1140*G1024G1025G1026A1027A1028A1029C1030cWWtSHtHHcSHtWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAAUGAUCGGGGC*GGUAAAG1
CGAAAAUGAUCGGGGC*GGUUAAG1
CGAAAAUGUACCGGGGC*GGAAAAG1
GGAAGAUGUAACGGGGC*GGGAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
GAAAAUGAUCGGGG*GUAAA1
GAAAAUGAUCGGGG*GUUAA1
GAAAAUGUACCGGGG*GAAAA1
GAAGAUGUAACGGGG*GGAAA1

Release history

Release3.873.883.89
Date2024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Basepair signature
    cWW-tSH-tHH-L-R-L-R-cSH-tWW-cWW-L-L-L-R-L
    Heat map statistics
    Min 0.12 | Avg 0.31 | Max 0.66
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