Motif IL_50787.1 Version IL_50787.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4QCN_010 | 4QCN | 0.2056 | 1 | A | 23S Ribosomal RNA | A | 381 | U | 382 | A | 383 | G | 384 | * | C | 304 | G | 305 | A | 306 | U | 308 | cWW | tWH | tHS | cWW | |
| 2 | IL_4QCN_053 | 4QCN | 0.0000 | 1 | A | 23S Ribosomal RNA | C | 1483 | U | 1484 | A | 1485 | G | 1486 | * | C | 1598 | G | 1599 | A | 1600 | G | 1602 | cWW | tWH | tHS | cWW | |
| 3 | IL_1LNG_002 | 1LNG | 0.1857 | 3 | B | SRP S RNA | G | 223 | U | 224 | A | 225 | G | 226 | * | C | 192 | G | 193 | A | 194 | C | 198 | cWW | tWH | tHS | cWW | |
| 4 | IL_4IOA_055 | 4IOA | 0.2093 | 1 | tSH-tHW (H) | X | LSU rRNA | C | 1451 | U | 1452 | A | 1453 | U | 1454 | * | A | 1567 | A | 1568 | A | 1569 | G | 1571 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAG*CGAAU | 1 |
| CUAG*CGAAG | 1 |
| GUAG*CGAACCC | 1 |
| CUAU*AAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA | 2 |
| UA*GAACC | 1 |
| UA*AAC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_50787.1 | Only in the parent motif |
|---|---|---|---|
| IL_48183.2 Compare | IL_4IOA_055, IL_1LNG_002 | IL_4QCN_053, IL_4QCN_010 | IL_4CUV_048, IL_1NUV_003, IL_4NVV_011, IL_4NVV_056 |
Children motifs
| Child motif | Common motif instances | Only in IL_50787.1 | Only in the child motif |
|---|---|---|---|
| IL_99561.1 Compare | IL_4QCN_053, IL_4IOA_055, IL_1LNG_002, IL_4QCN_010 | IL_1VW3_042, IL_2IL9_002 |
- Annotations
-
- (3)
- tSH-tHW (H) (1)
- Basepair signature
- cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.19 | Avg 0.18 | Max 0.32
Coloring options: