#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-63-74-5
1 IL_1VW3_0421VW30.87662A21S ribosomal RNAU1391A1392U1393U1394*A1372U1373U1374A1382cWWncSWcWW
2 IL_2IL9_0022IL90.71540MRibosomal Binding Domain of the IRES RNAU6018A6019U6020U6021*A6058A6059U6060A6061cWWncWWcWW
3 IL_4QCN_0104QCN0.25301A23S Ribosomal RNAA381U382A383G384*C304G305A306U308cWWtWHtHScWW
4 IL_4QCN_0534QCN0.18571A23S Ribosomal RNAC1483U1484A1485G1486*C1598G1599A1600G1602cWWtWHtHScWW
5 IL_1LNG_0021LNG0.00003B SRP S RNAG223U224A225G226*C192G193A194C198cWWtWHtHScWW
6 IL_4IOA_0554IOA0.26241tSH-tHW (H)X LSU rRNAC1451U1452A1453U1454*A1567A1568A1569G1571cWWtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAUU*AUUAAA1
UAUU*AAUA1
AUAG*CGAAU1
CUAG*CGAAG1
GUAG*CGAACCC1
CUAU*AAACG1
Non-Watson-Crick part of the motif
SequenceCounts
UA*GAA2
AU*UUAA1
AU*AU1
UA*GAACC1
UA*AAC1
Annotations
  • (5)
  • tSH-tHW (H) (1)
  • Basepair signature
    cWW-tWH-tHS-cWW
    Heat map statistics
    Min 0.19 | Avg 0.50 | Max 0.96
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