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Motif IL_52767.1 Version IL_52767.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_5J7L_2865J7L0.10031Isolated cWS basepairDA LSU rRNAA1247U1249G1250*C1196G1197U1198cWWcSWcWW
2 IL_4WF9_0444WF90.00001Isolated cWS basepairX LSU rRNAA1285U1287G1288*C1235G1236U1237cWWcSWcWW
3 IL_7RQB_0457RQB0.08361Isolated cWS basepair1A LSU rRNAA1247U1249G1250*C1196G1197U1198cWWcSWcWW
4 IL_7A0S_0417A0S0.12691Isolated cWS basepairX LSU rRNAA1260U1262G1263*C1210G1211U1212cWWcSWcWW
5 IL_4V9F_0464V9F0.16621Isolated cWS basepair0 LSU rRNAG1351C1353G1354*C1301G1302C1303cWWcSWcWW
6 IL_5TBW_0575TBW0.18291Isolated cWS basepair1 LSU rRNAA1428U1430G1431*C1376G1377U1378cWWcSWcWW
7 IL_2D6F_0012D6F0.29600Self complementaryFtRNAC927U928G929*C941G942G943cWWncWWcWW
8 IL_7Y2B_0027Y2B0.39870Isolated non-canonical cWW contactSRNA (13-mer)C6U7G8*C6||||5_555U7||||5_555G8||||5_555cWWcWW
9 IL_2ZI0_0012ZI00.52590Isolated near basepairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
10 IL_7A0S_0307A0S0.52920Isolated near basepairX LSU rRNAA883C884A885*U917A918U919cWWcWW
11 IL_4TS2_0034TS20.37960Isolated cWS basepairX+YSpinach aptamer RNA, bimolecular constructA17U18G19*C80G81U82cWWncSWcWW
12 IL_4WF9_0344WF90.41370Isolated cWS basepairX LSU rRNAU915U916U917*A950G951A952cWWncSWcWW
13 IL_5TBW_0475TBW0.40200Isolated cWS basepair1 LSU rRNAU1123U1124U1125*A1133G1134A1135cWWncSWcWW
14 IL_4V88_4064V880.42500Isolated near basepairA6 SSU rRNAC411A412U413*A420A421G422cWWcWW
15 IL_7VFT_0047VFT0.42140Isolated non-canonical cWW pairARNA (23-mer)C14||||12_555A15||||12_555G16||||12_555*C8A9G10cWWcWW
16 IL_7VFT_0027VFT0.42140Isolated non-canonical cWW pairARNA (23-mer)C14A15G16*C8||||12_555A9||||12_555G10||||12_555cWWcWW
17 IL_4V9F_0774V9F0.44680Isolated near basepair0 LSU rRNAG2136A2137C2138*G2237A2238C2239ncWWcWW
18 IL_3NJ7_0043NJ70.47210Isolated near basepairC+DRNA (10-mer)C6A7G8*C3A4G5cWWcWW
19 IL_3NJ7_0033NJ70.47290Isolated near basepairD+CRNA (10-mer)C6A7G8*C3A4G5cWWcWW
20 IL_7VFT_0017VFT0.59710Isolated non-canonical cWW contactARNA (23-mer)C5||||12_555A6||||12_555G7||||12_555*C17A18G19cWWcWW
21 IL_7VFT_0057VFT0.59710Isolated non-canonical cWW contactARNA (23-mer)C5A6G7*C17||||12_555A18||||12_555G19||||12_555cWWcWW
22 IL_7RQB_0307RQB0.37560Isolated cWS basepair1A LSU rRNAA870U871A872*U905G906U907cWWcSWcWW
23 IL_6CZR_1286CZR0.36451Single bulged G, near cWW1a SSU rRNAC382U383A385*U371G372G373cWWncWWcWW
24 IL_7RQB_0257RQB0.52581Intercalated cWW1A LSU rRNAC844G845C846*G931A933G934cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CAG6
AGUG*CGU5
UUU*AGA2
GACG*CGC1
CUG*CGG1
CUG*CUG1
UUA*UUA1
ACA*UAU1
AUG*CGU1
CAU*AAG1
GAC*GAC1
AUA*UGU1
CUGA*UGG1
CGC*GGAG1
Non-Watson-Crick part of the motif
SequenceCounts
A*A8
GU*G5
U*G5
U*U2
AC*G1
C*A1
UG*G1
G*GA1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWS basepair (10)
  • Isolated near basepair (6)
  • Isolated non-canonical cWW contact (3)
  • Isolated non-canonical cWW pair (2)
  • Self complementary (1)
  • Single bulged G, near cWW (1)
  • Intercalated cWW (1)
    • Basepair signature
    cWW-L-R-cWW
    Heat map statistics
    Min 0.00 | Avg 0.34 | Max 0.71
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