#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 6 71-72-52-63-45-6
1 IL_2ZJR_0392ZJR0.35381 X LSU rRNAC1111U1112C1113*G1098G1100U1101G1102cWWcwWcWW
2 IL_3U5H_0613U5H0.31101 525S rRNAC1275U1276C1277*G1262G1264U1265G1266cWWcwWcWWcSH
3 IL_2ZJR_0182ZJR0.17550 X LSU rRNAC769U770C771*G751G752U753G754cWWcwWcWWcSH
4 IL_3V2F_0223V2F0.15340 A23S Ribosomal RNAC756U757C758*G738G739U740G741cWWcwWcWWcSH
5 IL_1S72_0291S720.17440 0 LSU rRNAC849U850C851*G830U831U832G833cWWcwWcWWcSH
6 IL_4A1B_0384A1B0.00000 126S RRNAU913U914C915*G894A895U896A897cWWcwWcWWcSH
7 IL_3U5H_0333U5H0.17620 525S rRNAA888U889C890*G869G870U871U872cWWcwWcWWcSH
8 IL_3U5F_0143U5F0.19191 618S rRNAG204U205A206*U259U261U262C263cWWcwWcWWcSH
9 IL_2XZM_0142XZM0.26811 A18S RRNAG199U200A201*U256G257U259C260cWWcwWcWWncSH
10 IL_1S72_0821S720.23821 0 LSU rRNAG2494U2495C2496*G2524G2525U2527U2528cWWcwWcWWcSH
11 IL_3V2F_0913V2F0.25471 A23S Ribosomal RNAA2459U2460C2461*G2489G2490U2492U2493cWWcwWcWWcSH
12 IL_4A1B_1094A1B0.36061 126S RRNAG2816U2817G2818*U2846U2847U2849U2850cWWcwWcWW
13 IL_3U5H_1113U5H0.38401 525S rRNAG2828U2829G2830*U2858U2859U2861U2862cWWcwWcWW
14 IL_1S72_0031S720.42850 0 LSU rRNAG39C40G41*C440A441A442C443cWWcWWancWWcWWcSH
15 IL_2QBZ_0042QBZ0.43740 XM-Box RNA, ykoK riboswitch aptamerG149U150G151*C33U34C35C36cWWcWwcWWcSH
16 IL_3V2F_0033V2F0.53970 A23S Ribosomal RNAG42A43G44*C433U434C435C436cWWncWWcWWcSH
17 IL_1XJR_0011XJR0.70981Isolated basepair with bulged basesAs2m RNAC39A40G41*C9C10A12G13cWWcWW
18 IL_3P49_0093P490.68831 AGlycine riboswitchC142A143G144*C109G110A112G113cWWntSHncWW
19 IL_3P49_0063P490.66911 AGlycine riboswitchC51A52G53*C34G35A37G38ncWWntSHncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUC*GAGUG2
GUG*UUUUU2
CAG*CGAAG2
CUC*GGUG1
GGUG*CUC1
CUC*GUUG1
UUC*GAUA1
AUC*GGUU1
GUA*UUUUC1
GUA*UGAUC1
GUC*GGCUU1
AUC*GGUUU1
GCG*CAAC1
GUG*CUCC1
GAG*CUCC1
CAG*CCGAG1
Non-Watson-Crick part of the motif
SequenceCounts
U*UUU3
U*AGU2
U*GU2
A*GAA2
GU*U1
U*UU1
U*AU1
U*GAU1
U*GCU1
U*GUU1
C*AA1
U*UC1
A*UC1
A*CGA1

Release history

Release0.70.80.90.100.110.121.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_55938.2Only in the child motif
IL_55938.3
Compare
IL_4A1B_038, IL_1XJR_001, IL_1S72_029, IL_3U5F_014, IL_3V2F_091, IL_1S72_003, IL_2QBZ_004, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3V2F_003, IL_3P49_009, IL_2XZM_014, IL_3V2F_022IL_2ZJR_018, IL_2ZJR_039IL_4IOA_018
Annotations
  • Isolated basepair with bulged bases (1)
  • Basepair signature
    cWW-cWW-cSH-cWW
    Heat map statistics
    Min 0.11 | Avg 0.45 | Max 0.86
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