IL_55938.1

3D structures

Complete motif including flanking bases

Sequence	Counts
CUC*GAGUG	4
CAG*CGAAG	2
GUG*UUUUU	2
CUC*GGUG	2
GUA*UGAUC	1
CAG*CCGAG	1
GUA*UUUUC	1
GUC*GGCUU	1
CUC*GUUG	1
AUC*GGUU	1
UUC*GAUA	1
AUC*GGUUU	1
GCG*CAAC	1
GUG*CUCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*AGU	4
U*UUU	3
U*GU	3
A*GAA	2
U*GAU	1
A*CGA	1
U*GCU	1
U*UU	1
U*AU	1
U*GUU	1
C*AA	1
U*UC	1

Release history

Release	0.6
Date	2012-04-02
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_55938.1	Only in the parent motif
IL_58440.1 Compare	IL_1MMS_002, IL_2ZJR_018, IL_1S72_029, IL_1MMS_004	IL_4A1B_038, IL_1XJR_001, IL_2ZJR_039, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_3UXR_092, IL_2XZM_014	IL_3PYO_021
IL_34442.1 Compare	IL_2ZJR_039, IL_2XZM_014	IL_4A1B_038, IL_1XJR_001, IL_2ZJR_018, IL_1S72_029, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_1MMS_002, IL_3P49_009, IL_3UXR_092, IL_1MMS_004	IL_1X8W_009, IL_2FQN_002, IL_3O58_128, IL_3O58_045, IL_2O3Y_002, IL_3O58_072, IL_3O30_058
IL_25228.1 Compare	IL_1S72_003, IL_2QBZ_004	IL_4A1B_038, IL_1XJR_001, IL_2ZJR_018, IL_2ZJR_039, IL_3U5F_014, IL_2XZM_014, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_1MMS_002, IL_1S72_029, IL_3UXR_092, IL_1MMS_004
IL_98047.1 Compare	IL_3P49_009, IL_3P49_006	IL_4A1B_038, IL_1XJR_001, IL_2ZJR_018, IL_2ZJR_039, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_2XZM_014, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_1MMS_002, IL_1S72_029, IL_3UXR_092, IL_1MMS_004	IL_3O30_007, IL_3O58_013, IL_2DER_001, IL_3O58_062, IL_1S72_053
IL_76618.1 Compare	IL_1XJR_001	IL_4A1B_038, IL_2ZJR_018, IL_2ZJR_039, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_2XZM_014, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_1MMS_002, IL_1S72_029, IL_3UXR_092, IL_1MMS_004	IL_1FJG_003
IL_16722.1 Compare	IL_1S72_082	IL_4A1B_038, IL_1XJR_001, IL_2ZJR_018, IL_2ZJR_039, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_2XZM_014, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_1MMS_002, IL_1S72_029, IL_3UXR_092, IL_1MMS_004	IL_2QBG_093, IL_2ZJR_087

Children motifs

Child motif	Common motif instances	Only in IL_55938.1	Only in the child motif
IL_55938.2 Compare	IL_4A1B_038, IL_1XJR_001, IL_2ZJR_018, IL_2ZJR_039, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_1S72_029, IL_2XZM_014	IL_1MMS_002, IL_3UXR_092, IL_1MMS_004, IL_3UXR_022	IL_3V2F_003, IL_3V2F_091, IL_3V2F_022

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3	break		4		5		6		7	1-7	2-5	2-6	3-4	5-6
1	IL_2XZM_014	2XZM	0.4653	1		A	G	199	U	200	A	201	*	U	256	G	257	U	259	C	260	cWW		cwW	cWW	ncSH
2	IL_3P49_006	3P49	0.4437	1		A	C	51	A	52	G	53	*	C	34	G	35	A	37	G	38	ncWW		ntSH	ncWW
3	IL_4A1B_109	4A1B	0.4418	1		1	G	2816	U	2817	G	2818	*	U	2846	U	2847	U	2849	U	2850	cWW		cwW	cWW
4	IL_3P49_009	3P49	0.4362	1		A	C	142	A	143	G	144	*	C	109	G	110	A	112	G	113	cWW		ntSH	ncWW
5	IL_1XJR_001	1XJR	0.3287	1	Isolated basepair with bulged bases	A	C	39	A	40	G	41	*	C	9	C	10	A	12	G	13	cWW			cWW
6	IL_3U5F_014	3U5F	0.2870	1		6	G	204	U	205	A	206	*	U	259	U	261	U	262	C	263	cWW		cwW	cWW	cSH
7	IL_1S72_082	1S72	0.3083	1		0	G	2494	U	2495	C	2496	*	G	2524	G	2525	U	2527	U	2528	cWW		cwW	cWW	cSH
8	IL_1S72_029	1S72	0.2876	0	Major groove platform with extra cWW (H)	0	C	849	U	850	C	851	*	G	830	U	831	U	832	G	833	cWW		cwW	cWW	cSH
9	IL_3UXR_022	3UXR	0.2697	0		A	C	756	U	757	C	758	*	G	738	G	739	U	740	G	741	cWW		cwW	cWW	cSH
10	IL_2ZJR_018	2ZJR	0.3025	0	Major groove platform with extra cWW (H)	X	C	769	U	770	C	771	*	G	751	G	752	U	753	G	754	cWW		cwW	cWW	cSH
11	IL_3U5H_033	3U5H	0.2482	0		5	A	888	U	889	C	890	*	G	869	G	870	U	871	U	872	cWW		cwW	cWW	cSH
12	IL_4A1B_038	4A1B	0.2341	0		1	U	913	U	914	C	915	*	G	894	A	895	U	896	A	897	cWW		cwW	cWW	cSH
13	IL_3UXR_092	3UXR	0.0000	1		A	A	2459	U	2460	C	2461	*	G	2489	G	2490	U	2492	U	2493	cWW		cwW	cWW	cSH
14	IL_2ZJR_039	2ZJR	0.3290	1		X	C	1111	U	1112	C	1113	*	G	1098	G	1100	U	1101	G	1102	cWW		cwW	cWW
15	IL_1S72_003	1S72	0.3418	0	Major groove platform with extra cWW (H)	0	G	39	C	40	G	41	*	C	440	A	441	A	442	C	443	cWW	cWWa	ncWW	cWW	cSH
16	IL_2QBZ_004	2QBZ	0.4399	0		X	G	149	U	150	G	151	*	C	33	U	34	C	35	C	36	cWW	cWw		cWW	cSH
17	IL_3U5H_111	3U5H	0.4489	1		5	G	2828	U	2829	G	2830	*	U	2858	U	2859	U	2861	U	2862	cWW		cwW	cWW
18	IL_1MMS_002	1MMS	0.5601	1	Major groove platform with extra cWW	C	C	1100	U	1101	C	1102	*	G	1087	G	1089	U	1090	G	1091	cWW		cwW	cWW	cSH
19	IL_1MMS_004	1MMS	0.5961	1		D	C	1100	U	1101	C	1102	*	G	1087	G	1089	U	1090	G	1091	cWW		cwW	cWW	cSH
20	IL_3U5H_061	3U5H	0.6444	1		5	C	1275	U	1276	C	1277	*	G	1262	G	1264	U	1265	G	1266	cWW		cwW	cWW	cSH

Motif IL_55938.1 Version IL_55938.1 of this group appears in releases 0.6 to 0.6 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_55938.1 Version IL_55938.1 of this group appears in releases 0.6 to 0.6

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