Motif IL_56077.1 Version IL_56077.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_094 | 4IOA | 0.7999 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2570 | G | 2571 | * | C | 2580 | A | 2581 | G | 2582 | cWW | cWW | |
| 2 | IL_2XZM_026 | 2XZM | 0.0000 | 0 | A | 18S RRNA | G | 477 | G | 478 | * | U | 493 | A | 494 | C | 495 | cWW | ncWW | ntSH | |
| 3 | IL_4FAW_005 | 4FAW | 0.6235 | 2 | A | Group II catalytic intron D1-D4-3 | G | 128 | G | 129 | * | U | 234 | G | 236 | U | 238 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CAG | 1 |
| GG*UAC | 1 |
| GG*UUGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 2 |
| *UGA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_56077.1 | Only in the parent motif |
|---|---|---|---|
| IL_16377.1 Compare | IL_4FAW_005 | IL_2XZM_026, IL_4IOA_094 | IL_3RW6_003 |
| IL_03914.1 Compare | IL_2XZM_026 | IL_4IOA_094, IL_4FAW_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_56077.1 | Only in the child motif |
|---|---|---|---|
| IL_35994.1 Compare | IL_4IOA_094 | IL_2XZM_026, IL_4FAW_005 | IL_1FJG_022 |
| IL_67887.1 Compare | IL_4FAW_005 | IL_2XZM_026, IL_4IOA_094 | IL_3RW6_003 |
- Annotations
-
- (2)
- Single bulged A (H) (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.62 | Avg 0.53 | Max 0.96
Coloring options: