Motif IL_56455.1 Version IL_56455.1 of this group appears in releases 3.2 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	break		10		11		12		13		14		15		16		17		18	1-18	2-17	3-16	4-15	6-13	7-12	8-11	9-10
1	IL_364D_003	364D	0.2161	0	Bacterial 5S Loop E	B+C	RNA (19-mer) + RNA (31-mer)	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	ntHW	cWB	ntWH	tHS	cWW
2	IL_1FEU_001	1FEU	0.1725	0	Bacterial 5S Loop E	B+C	19 NT FRAGMENT OF 5S RRNA + 21 NT FRAGMENT OF 5S RRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	ncBW	cWB	tWH	tHS	cWW
3	IL_1DFU_001	1DFU	0.1110	0	Bacterial 5S Loop E	N+M	5S RRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
4	IL_5J7L_359	5J7L	0.0000	0	Bacterial 5S Loop E	DB	5S rRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
5	IL_5FDV_115	5FDV	0.1098	0	Bacterial 5S Loop E	1B	5S rRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	C	79	*	G	98	G	99	A	100	G	101	A	102	G	103	U	104	A	105	G	106	cWW	tSH	tHW	ncBW	cWB	tWH	tHS	cWW
6	IL_4IOA_108	4IOA	0.1490	0	Bacterial 5S Loop E	Y	5S rRNA	C	73	A	74	A	75	U	76	G	77	A	78	U	79	A	80	C	81	*	G	100	A	101	A	102	A	103	A	104	G	105	U	106	C	107	G	108	cWW	tSH	tHW	cBW	ncWB	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAUGGUAG*CGAGAGUAG	4
CGAUGGUAC*GGAGAGUAG	1
CAAUGAUAC*GAAAAGUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUGGUA*GAGAGUA	5
AAUGAUA*AAAAGUC	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Bacterial 5S Loop E (6)
Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
Heat map statistics: Min 0.10 | Avg 0.15 | Max 0.26

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Coloring options: Nucleotide numbers

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