Motif IL_57188.2 Version IL_57188.2 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11	1-11	2-4	2-6	2-10	4-5	4-9	4-10	5-6	6-10	6-11	7-8	7-10
1	IL_7A0S_036	7A0S	0.3954	2		X	LSU rRNA	C	1029	U	1030	C	1031	A	1032	G	1033	U	1034	G	1035	*	C	1150	U	1151	A	1153	G	1155	cWW		ncSW	ntSH	ncHS	ntHS	ntWW	ncSH			cWW
2	IL_4WF9_039	4WF9	0.3852	1		X	LSU rRNA	U	1062	U	1063	A	1064	A	1065	G	1066	U	1067	G	1068	*	C	1184	U	1185	A	1186	A	1188	cWW	ncSW		ntWH		ntHW	ntWW	cSH	ntWW		cWW
3	IL_4Y4O_216	4Y4O	0.0000	2		2A	LSU rRNA	C	1018	U	1019	A	1020	A	1021	G	1022	U	1023	G	1024	*	C	1140	U	1141	A	1142\|\|\|A	G	1144	cWW	cSH		tWW		tWW		cSH			cWW	ntSH
4	IL_4V9F_040	4V9F	0.0685	2		0	LSU rRNA	U	1115	U	1116	A	1117	A	1118	G	1119	U	1120	G	1121	*	C	1243	U	1244	A	1246	A	1248	cWW	cSH		tWW		tWW		cSH			cWW	ntSH
5	IL_5J7L_280	5J7L	0.0742	1		DA	LSU rRNA	U	1018	U	1019	A	1020	A	1021	G	1022	U	1023	G	1024	*	C	1140	U	1141	A	1142	A	1144	cWW	cSH		tWW		tWW		cSH		ntWS	cWW	ntSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UUAAGUG*CUAAA	2
CUCAGUG*CUCAAG	1
CUAAGUG*CUUAAG	1
UUAAGUG*CUCAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAGU*UAA	2
UCAGU*UCAA	1
UAAGU*UUAA	1
UAAGU*UCAA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations
Basepair signature: cWW-tWW-cSH-L-tWW-cSH-cWW
Heat map statistics: Min 0.07 | Avg 0.22 | Max 0.41

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Coloring options: Nucleotide numbers

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