Motif IL_57885.1 Version IL_57885.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_018 | 7A0S | 0.7622 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | * | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | cWW | ncWW | tSH | ntSH | ntHS | cWW |
| 2 | IL_8P9A_410 | 8P9A | 0.4464 | 0 | Triple sheared related (H) | sR | SSU rRNA | G | 703 | C | 704 | U | 705 | A | 706 | A | 707 | C | 708 | * | G | 730 | C | 731 | G | 732 | A | 733 | A | 734 | C | 735 | cWW | ncWW | ntHS | cWW | cWW | |
| 3 | IL_8OI5_028 | 8OI5 | 0.2075 | 0 | 1 | LSU rRNA | C | 764 | G | 765 | G | 766 | A | 767 | U | 768 | G | 769 | * | C | 754 | U | 755 | G | 756 | A | 757 | U | 758 | G | 759 | cWW | tSH | ntSH | tHS | cWw | cWW | |
| 4 | IL_8P9A_254 | 8P9A | 0.1858 | 0 | AR | LSU rRNA | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | * | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | cWW | tSH | ntSH | tHS | cWw | cWW | |
| 5 | IL_8CRE_465 | 8CRE | 0.0000 | 0 | CM | SSU rRNA | G | 1527 | G | 1528 | G | 1529 | A | 1530 | U | 1531 | A | 1532 | * | U | 1553 | U | 1554 | C | 1555 | A | 1556 | A | 1557 | C | 1558 | cWW | tSH | ntSH | cWw | cWW | ||
| 6 | IL_8P9A_451 | 8P9A | 0.1115 | 0 | sR | SSU rRNA | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | * | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | cWW | tSH | ntSH | cWw | cWW | ||
| 7 | IL_4LFB_055 | 4LFB | 0.1206 | 0 | A | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | ntSH | ntHS | cWw | cWW | |
| 8 | IL_8B0X_056 | 8B0X | 0.1398 | 0 | A | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | tSH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAUG*CUGAUG | 2 |
| GGGAUA*UUCAAC | 2 |
| CGGAUU*AUGAAG | 2 |
| GCGGAG*UGAAAC | 1 |
| GCUAAC*GCGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAU*UGAU | 2 |
| GGAU*UCAA | 2 |
| GGAU*UGAA | 2 |
| CGGA*GAAA | 1 |
| CUAA*CGAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Triple sheared with non-canonical cWW (1)
- Triple sheared related (H) (1)
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.32 | Max 0.77
Coloring options: