Motif IL_58103.5 Version IL_58103.5 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-3 | 1-8 | 4-8 | 5-6 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_358 | 5J7L | 0.2550 | 2 | Symmetric double minor groove platform | DB | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 2 | IL_4V9F_104 | 4V9F | 0.1060 | 2 | Symmetric double minor groove platform | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW |
| 3 | IL_5NS3_002 | 5NS3 | 0.0000 | 2 | Symmetric double minor groove platform | C | double-stranded RNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 4 | IL_7RQB_114 | 7RQB | 0.1276 | 2 | Symmetric double minor groove platform | 1B | 5S rRNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | A | 48 | ncSH | cWW | cWS | cWW | tSW |
| 5 | IL_5TBW_376 | 5TBW | 0.1634 | 2 | Symmetric double minor groove platform | AS | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW |
| 6 | IL_4WF9_115 | 4WF9 | 0.2112 | 2 | Symmetric double minor groove platform | Y | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 42 | C | 45 | A | 46 | cWW | ncWS | cWW | ntSW | |
| 7 | IL_6CZR_158 | 6CZR | 0.4935 | 1 | Minor groove platform | 1a | SSU rRNA | C | 1128 | A | 1129 | C | 1130 | U | 1131 | C | 1132 | * | G | 1107 | U | 1108 | G | 1110 | ncSH | cWW | ntHS | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCCC*GAACU | 2 |
| UUCCC*GAACA | 2 |
| UACCC*GAACA | 1 |
| UUCCC*GAUCA | 1 |
| CACUC*GUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCC*AAC | 2 |
| UCC*AAC | 2 |
| ACC*AAC | 1 |
| UCC*AUC | 1 |
| ACU*UU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Symmetric double minor groove platform (6)
- Minor groove platform (1)
- Basepair signature
- cWW-L-L-cWS-tSW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.25 | Max 0.59
Coloring options: