Motif IL_58764.2 Version IL_58764.2 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3LOA_001 | 3LOA | 0.0000 | 0 | UAA/GAN variation | B+A | RNA (23-mer) | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | C | 1402 | C | 1403 | C | 1404 | cWW | ncWW | cWW | |
| 2 | IL_3BNT_002 | 3BNT | 0.3085 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | G | 14||||4_665 | C | 15||||4_665 | A | 16||||4_665 | A | 17||||4_665 | G | 18||||4_665 | * | C | 6 | A | 7 | C | 8 | C | 9 | cWW | ncWB | cWw | cWW |
| 3 | IL_3BNT_005 | 3BNT | 0.3085 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | G | 14 | C | 15 | A | 16 | A | 17 | G | 18 | * | C | 6||||4_665 | A | 7||||4_665 | C | 8||||4_665 | C | 9||||4_665 | cWW | ncWB | cWw | cWW |
| 4 | IL_3BNR_008 | 3BNR | 0.3872 | 0 | Minor groove platform related | D+C | A site of human mitochondrial ribosome, chain three | G | 13 | C | 14 | A | 15 | A | 16 | G | 17 | * | C | 7 | A | 8 | C | 9 | C | 10 | cWW | ncWw | cWw | cWW |
| 5 | IL_6CZR_120 | 6CZR | 0.3788 | 0 | Minor groove platform related | 1a | SSU rRNA | C | 127 | U | 128 | A | 129 | C | 130 | C | 131 | * | G | 223 | A | 224 | U | 225 | G | 226 | cWW | ncwW | cWW | |
| 6 | IL_5J7L_010 | 5J7L | 0.3473 | 0 | Minor groove platform related | AA | SSU rRNA | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW | |
| 7 | IL_4LFB_008 | 4LFB | 0.3273 | 0 | A | SSU rRNA | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW | ||
| 8 | IL_2O3V_002 | 2O3V | 0.6061 | 0 | Decoding loop related | B+A | RNA (23-mer) | A | 38 | A | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWWa | cWW | |
| 9 | IL_7RQB_109 | 7RQB | 0.5911 | 0 | 1A | LSU rRNA | C | 2870 | C | 2871 | G | 2872 | A | 2873 | C | 2874 | * | G | 2843 | G | 2844 | G | 2845 | G | 2846 | cWW | ncSW | cWW | ||
| 10 | IL_5J7L_353 | 5J7L | 0.6537 | 0 | Multiple bulged bases with non-canonical cWW | DA | LSU rRNA | C | 2870 | U | 2871 | A | 2872 | A | 2873 | C | 2874 | * | G | 2843 | G | 2844 | U | 2845 | G | 2846 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAG*CACC | 3 |
| CUACC*GAUG | 2 |
| GUAAC*GCCC | 1 |
| CUGCC*GAUG | 1 |
| AAAAG*CGCU | 1 |
| CCGAC*GGGG | 1 |
| CUAAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*AC | 3 |
| UAC*AU | 2 |
| UAA*CC | 1 |
| UGC*AU | 1 |
| AAA*GC | 1 |
| CGA*GG | 1 |
| UAA*GU | 1 |
- Annotations
-
- Minor groove platform related (3)
- Tandem non-canonical cWW pairs (2)
- (2)
- Decoding loop related (1)
- UAA/GAN variation (1)
- Multiple bulged bases with non-canonical cWW (1)
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.00 | Avg 0.36 | Max 0.65
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