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Motif IL_58764.2 Version IL_58764.2 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5break 6 7 8 91-92-84-75-6
1 IL_3LOA_0013LOA0.00000UAA/GAN relatedB+ARNA (23-mer)G1497U1498A1499A1500C1501*G1401C1402C1403C1404cWWncWWcWW
2 IL_3BNT_0023BNT0.30850Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeG14||||4_665C15||||4_665A16||||4_665A17||||4_665G18||||4_665*C6A7C8C9cWWncWBcWwcWW
3 IL_3BNT_0053BNT0.30850Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeG14C15A16A17G18*C6||||4_665A7||||4_665C8||||4_665C9||||4_665cWWncWBcWwcWW
4 IL_3BNR_0083BNR0.38720Minor groove platform relatedD+CA site of human mitochondrial ribosome, chain threeG13C14A15A16G17*C7A8C9C10cWWncWwcWwcWW
5 IL_6CZR_1206CZR0.37880Minor groove platform related1a SSU rRNAC127U128A129C130C131*G223A224U225G226cWWncwWcWW
6 IL_5J7L_0105J7L0.34730Minor groove platform relatedAA SSU rRNAC132U133G134C135C136*G227A228U229G230cWWcwWcWW
7 IL_4LFB_0084LFB0.32730A SSU rRNAC132U133A134C135C136*G227A228U229G230cWWcwWcWW
8 IL_2O3V_0022O3V0.60610Decoding loop relatedB+ARNA (23-mer)A38A39A40A41G42*C7G8C9U10cWWcWWacWW
9 IL_7RQB_1097RQB0.591101A LSU rRNAC2870C2871G2872A2873C2874*G2843G2844G2845G2846cWWncSWcWW
10 IL_5J7L_3535J7L0.65370Multiple bulged bases with non-canonical cWWDA LSU rRNAC2870U2871A2872A2873C2874*G2843G2844U2845G2846cWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCAAG*CACC3
CUACC*GAUG2
GUAAC*GCCC1
CUGCC*GAUG1
AAAAG*CGCU1
CCGAC*GGGG1
CUAAC*GGUG1
Non-Watson-Crick part of the motif
SequenceCounts
CAA*AC3
UAC*AU2
UAA*CC1
UGC*AU1
AAA*GC1
CGA*GG1
UAA*GU1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusUpdated, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform related (3)
  • Tandem non-canonical cWW pairs (2)
  • (2)
  • Decoding loop related (1)
  • UAA/GAN related (1)
  • Multiple bulged bases with non-canonical cWW (1)
    • Basepair signature
    cWW-L-R-L-R-L-cWW
    Heat map statistics
    Min 0.00 | Avg 0.36 | Max 0.65
    Help

    Coloring options:

    IL_3LOA_001:IL_3LOA_001 = 0IL_3LOA_001:IL_3BNT_002 = 0.3085IL_3LOA_001:IL_3BNT_005 = 0.3085IL_3LOA_001:IL_3BNR_008 = 0.3872IL_3LOA_001:IL_6CZR_120 = 0.3788IL_3LOA_001:IL_5J7L_010 = 0.3473IL_3LOA_001:IL_4LFB_008 = 0.3273IL_3LOA_001:IL_2O3V_002 = 0.6061IL_3LOA_001:IL_7RQB_109 = 0.5911IL_3LOA_001:IL_5J7L_353 = 0.6537IL_3BNT_002:IL_3LOA_001 = 0.3085IL_3BNT_002:IL_3BNT_002 = 0IL_3BNT_002:IL_3BNT_005 = 0.0001IL_3BNT_002:IL_3BNR_008 = 0.1696IL_3BNT_002:IL_6CZR_120 = 0.3114IL_3BNT_002:IL_5J7L_010 = 0.2704IL_3BNT_002:IL_4LFB_008 = 0.2696IL_3BNT_002:IL_2O3V_002 = 0.5054IL_3BNT_002:IL_7RQB_109 = 0.5468IL_3BNT_002:IL_5J7L_353 = 0.5727IL_3BNT_005:IL_3LOA_001 = 0.3085IL_3BNT_005:IL_3BNT_002 = 0.0001IL_3BNT_005:IL_3BNT_005 = 0IL_3BNT_005:IL_3BNR_008 = 0.1696IL_3BNT_005:IL_6CZR_120 = 0.3114IL_3BNT_005:IL_5J7L_010 = 0.2704IL_3BNT_005:IL_4LFB_008 = 0.2696IL_3BNT_005:IL_2O3V_002 = 0.5054IL_3BNT_005:IL_7RQB_109 = 0.5468IL_3BNT_005:IL_5J7L_353 = 0.5727IL_3BNR_008:IL_3LOA_001 = 0.3872IL_3BNR_008:IL_3BNT_002 = 0.1696IL_3BNR_008:IL_3BNT_005 = 0.1696IL_3BNR_008:IL_3BNR_008 = 0IL_3BNR_008:IL_6CZR_120 = 0.3237IL_3BNR_008:IL_5J7L_010 = 0.3124IL_3BNR_008:IL_4LFB_008 = 0.3111IL_3BNR_008:IL_2O3V_002 = 0.5224IL_3BNR_008:IL_7RQB_109 = 0.5878IL_3BNR_008:IL_5J7L_353 = 0.5822IL_6CZR_120:IL_3LOA_001 = 0.3788IL_6CZR_120:IL_3BNT_002 = 0.3114IL_6CZR_120:IL_3BNT_005 = 0.3114IL_6CZR_120:IL_3BNR_008 = 0.3237IL_6CZR_120:IL_6CZR_120 = 0IL_6CZR_120:IL_5J7L_010 = 0.1789IL_6CZR_120:IL_4LFB_008 = 0.1576IL_6CZR_120:IL_2O3V_002 = 0.4724IL_6CZR_120:IL_7RQB_109 = 0.4683IL_6CZR_120:IL_5J7L_353 = 0.4801IL_5J7L_010:IL_3LOA_001 = 0.3473IL_5J7L_010:IL_3BNT_002 = 0.2704IL_5J7L_010:IL_3BNT_005 = 0.2704IL_5J7L_010:IL_3BNR_008 = 0.3124IL_5J7L_010:IL_6CZR_120 = 0.1789IL_5J7L_010:IL_5J7L_010 = 0IL_5J7L_010:IL_4LFB_008 = 0.1006IL_5J7L_010:IL_2O3V_002 = 0.4696IL_5J7L_010:IL_7RQB_109 = 0.446IL_5J7L_010:IL_5J7L_353 = 0.4785IL_4LFB_008:IL_3LOA_001 = 0.3273IL_4LFB_008:IL_3BNT_002 = 0.2696IL_4LFB_008:IL_3BNT_005 = 0.2696IL_4LFB_008:IL_3BNR_008 = 0.3111IL_4LFB_008:IL_6CZR_120 = 0.1576IL_4LFB_008:IL_5J7L_010 = 0.1006IL_4LFB_008:IL_4LFB_008 = 0IL_4LFB_008:IL_2O3V_002 = 0.433IL_4LFB_008:IL_7RQB_109 = 0.4388IL_4LFB_008:IL_5J7L_353 = 0.4709IL_2O3V_002:IL_3LOA_001 = 0.6061IL_2O3V_002:IL_3BNT_002 = 0.5054IL_2O3V_002:IL_3BNT_005 = 0.5054IL_2O3V_002:IL_3BNR_008 = 0.5224IL_2O3V_002:IL_6CZR_120 = 0.4724IL_2O3V_002:IL_5J7L_010 = 0.4696IL_2O3V_002:IL_4LFB_008 = 0.433IL_2O3V_002:IL_2O3V_002 = 0IL_2O3V_002:IL_7RQB_109 = 0.4963IL_2O3V_002:IL_5J7L_353 = 0.6034IL_7RQB_109:IL_3LOA_001 = 0.5911IL_7RQB_109:IL_3BNT_002 = 0.5468IL_7RQB_109:IL_3BNT_005 = 0.5468IL_7RQB_109:IL_3BNR_008 = 0.5878IL_7RQB_109:IL_6CZR_120 = 0.4683IL_7RQB_109:IL_5J7L_010 = 0.446IL_7RQB_109:IL_4LFB_008 = 0.4388IL_7RQB_109:IL_2O3V_002 = 0.4963IL_7RQB_109:IL_7RQB_109 = 0IL_7RQB_109:IL_5J7L_353 = 0.2821IL_5J7L_353:IL_3LOA_001 = 0.6537IL_5J7L_353:IL_3BNT_002 = 0.5727IL_5J7L_353:IL_3BNT_005 = 0.5727IL_5J7L_353:IL_3BNR_008 = 0.5822IL_5J7L_353:IL_6CZR_120 = 0.4801IL_5J7L_353:IL_5J7L_010 = 0.4785IL_5J7L_353:IL_4LFB_008 = 0.4709IL_5J7L_353:IL_2O3V_002 = 0.6034IL_5J7L_353:IL_7RQB_109 = 0.2821IL_5J7L_353:IL_5J7L_353 = 0IL_3LOA_001IL_3BNT_002IL_3BNT_005IL_3BNR_008IL_6CZR_120IL_5J7L_010IL_4LFB_008IL_2O3V_002IL_7RQB_109IL_5J7L_353Discrepancy0.000.100.200.300.400.500.60
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