Motif IL_59344.1 Version IL_59344.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8SSW_003 | 8SSW | 0.2951 | 0 | C+D | RNA (28-MER) | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | * | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | cWW | cWH | ncWWa | ncWW | cWH | cWW | |
2 | IL_6O5F_001 | 6O5F | 0.0000 | 0 | C+D | RNA (23-mer) | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | * | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | cWW | ncWW | ncWWa | cWW | cWH | cWW | |
3 | IL_4EYA_005 | 4EYA | 0.3933 | 0 | Tandem non-canonical cWW pairs with near WC pairs | h+g | RNA (12-mer) | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | * | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | cWW | ncWW | ncwW | ncWW | ncWS | |
4 | IL_7A0S_018 | 7A0S | 0.8599 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | * | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | cWW | ncWW | tSH | ntSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGCAAG*CGCAAG | 2 |
CCUUGG*CCUUGG | 1 |
GCGGAG*UGAAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GCAA*GCAA | 2 |
CUUG*CUUG | 1 |
CGGA*GAAA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Tandem non-canonical cWW pairs with near WC pairs (1)
- Triple sheared with non-canonical cWW (1)
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.30 | Avg 0.47 | Max 0.86
Coloring options: