#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3break 4 5 6 71-61-72-63-4
1 IL_4NVV_0354NVV0.61050A23S Ribosomal RNAG938C939C940*G929G930C931C932ncWWncWwncWW
2 IL_1VW3_0221VW30.36830A21S ribosomal RNAG727C728C729*G866A867G868U869cWWncWWcWW
3 IL_1S72_0531S720.320400 LSU rRNAA1465C1466C1467*G1475A1476C1477U1478cWWcWBcWW
4 IL_1VW3_0291VW30.00000A21S ribosomal RNAG805G806A807*U818U819U820U821cWWncWWcWW
5 IL_1VW3_0561VW30.36440A21S ribosomal RNAU1793U1794U1795*A1754A1755U1756A1757cWWcWW
6 IL_2O3V_0032O3V0.67302A+BRNA (23-mer)A15A17G19*C30G31C32U33cWWcSWcWW
7 IL_3MEI_0043MEI0.68162A+BRNA (23-mer)G13C15G17*C7G8C9C10cWWcSWcWW
8 IL_4KR6_0024KR60.70458DRNA (39-MER)U8U16G18*C25A26A27G28cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGCC*GCC1
GCC*GAGU1
ACC*GACU1
GGA*UUUU1
UUU*AAUA1
AAAAG*CGCU1
GCCUG*CGCC1
UAGUGUCCUUG*CAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GC*C1
C*AG1
C*AC1
G*UU1
U*AU1
AAA*GC1
CCU*GC1
AGUGUCCUU*AA1
Annotations
  • (8)
  • Basepair signature
    cWW-cSW-R-cWW
    Heat map statistics
    Min 0.14 | Avg 0.53 | Max 0.87
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