Motif IL_55214.1 Version IL_55214.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-6 | 1-7 | 2-6 | 3-4 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4NVV_035 | 4NVV | 0.6105 | 0 | A | 23S Ribosomal RNA | G | 938 | C | 939 | C | 940 | * | G | 929 | G | 930 | C | 931 | C | 932 | ncWW | ncWw | ncWW | |
2 | IL_1VW3_022 | 1VW3 | 0.3683 | 0 | A | 21S ribosomal RNA | G | 727 | C | 728 | C | 729 | * | G | 866 | A | 867 | G | 868 | U | 869 | cWW | ncWW | cWW | |
3 | IL_1S72_053 | 1S72 | 0.3204 | 0 | 0 | LSU rRNA | A | 1465 | C | 1466 | C | 1467 | * | G | 1475 | A | 1476 | C | 1477 | U | 1478 | cWW | cWB | cWW | |
4 | IL_1VW3_029 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | G | 805 | G | 806 | A | 807 | * | U | 818 | U | 819 | U | 820 | U | 821 | cWW | ncWW | cWW | |
5 | IL_1VW3_056 | 1VW3 | 0.3644 | 0 | A | 21S ribosomal RNA | U | 1793 | U | 1794 | U | 1795 | * | A | 1754 | A | 1755 | U | 1756 | A | 1757 | cWW | cWW | ||
6 | IL_2O3V_003 | 2O3V | 0.6730 | 2 | A+B | RNA (23-mer) | A | 15 | A | 17 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW | |
7 | IL_3MEI_004 | 3MEI | 0.6816 | 2 | A+B | RNA (23-mer) | G | 13 | C | 15 | G | 17 | * | C | 7 | G | 8 | C | 9 | C | 10 | cWW | cSW | cWW | |
8 | IL_4KR6_002 | 4KR6 | 0.7045 | 8 | D | RNA (39-MER) | U | 8 | U | 16 | G | 18 | * | C | 25 | A | 26 | A | 27 | G | 28 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGCC*GCC | 1 |
GCC*GAGU | 1 |
ACC*GACU | 1 |
GGA*UUUU | 1 |
UUU*AAUA | 1 |
AAAAG*CGCU | 1 |
GCCUG*CGCC | 1 |
UAGUGUCCUUG*CAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GC*C | 1 |
C*AG | 1 |
C*AC | 1 |
G*UU | 1 |
U*AU | 1 |
AAA*GC | 1 |
CCU*GC | 1 |
AGUGUCCUU*AA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_55214.1 | Only in the parent motif |
---|---|---|---|
IL_97296.1 Compare | IL_3MEI_004, IL_2O3V_003 | IL_1VW3_056, IL_1S72_053, IL_4KR6_002, IL_1VW3_022, IL_4NVV_035, IL_1VW3_029 | IL_3U5F_017, IL_3V2F_105 |
IL_90133.3 Compare | IL_1S72_053 | IL_3MEI_004, IL_1VW3_056, IL_2O3V_003, IL_4KR6_002, IL_1VW3_022, IL_4NVV_035, IL_1VW3_029 | IL_4BPP_066, IL_3U5F_028, IL_2AW7_006, IL_3V2F_031, IL_3U5F_068 |
Children motifs
Child motif | Common motif instances | Only in IL_55214.1 | Only in the child motif |
---|---|---|---|
IL_59745.1 Compare | IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4NVV_035, IL_4KR6_002 | IL_1VW3_029, IL_1VW3_056, IL_1S72_053 | IL_4CUV_040 |
IL_77277.1 Compare | IL_1VW3_029, IL_1VW3_056, IL_1S72_053 | IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4NVV_035, IL_4KR6_002 | IL_1X8W_009, IL_4IOA_061, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4NVV_089, IL_3Q1Q_006, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093 |
- Annotations
-
- (8)
- Basepair signature
- cWW-cSW-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.53 | Max 0.87
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