Motif IL_60823.1 Version IL_60823.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KR6_002 | 4KR6 | 0.4523 | 8 | D | RNA (39-MER) | C | 25 | A | 26 | A | 27 | G | 28 | * | U | 8 | U | 16 | G | 18 | cWW | ncWW | cWW | |
| 2 | IL_3MEI_004 | 3MEI | 0.0000 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW | |
| 3 | IL_2O3V_003 | 2O3V | 0.1661 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | |
| 4 | IL_2IL9_001 | 2IL9 | 0.7320 | 1 | Tandem non-canonical cWW pairs | A | Ribosomal Binding Domain of the IRES RNA | G | 6110 | G | 6111 | A | 6112 | C | 6113 | * | G | 6079 | U | 6080 | U | 6082 | cWW | cWW | |
| 5 | IL_7R9F_001 | 7R9F | 0.9297 | 1 | B | RNA (18-mer) | C | 5||||8_555 | G | 6||||8_555 | G | 7||||8_555 | G | 8||||8_555 | * | C | 5 | G | 7 | G | 8 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*UAGUGUCCUUG | 1 |
| CGCC*GCCUG | 1 |
| CGCU*AAAAG | 1 |
| GGAC*GUCU | 1 |
| CGGG*CGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGUGUCCUU | 1 |
| GC*CCU | 1 |
| GC*AAA | 1 |
| GA*UC | 1 |
| GG*GG | 1 |
- Annotations
-
- (4)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.52 | Max 0.98
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