Motif IL_64063.1 Version IL_64063.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ZT0_004 | 4ZT0 | 0.5578 | 1 | Single bulged U | D | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 2 | IL_5B2T_002 | 5B2T | 0.5543 | 1 | Single bulged U | A | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 3 | IL_5FQ5_002 | 5FQ5 | 0.5113 | 1 | Single bulged U | A | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 4 | IL_5F9R_003 | 5F9R | 0.5524 | 1 | Single bulged U | A | G | 72 | C | 73 | * | G | 76 | C | 78 | cWW | cWW |
| 5 | IL_4Y4O_197 | 4Y4O | 0.3269 | 1 | Single bulged G | 2A | G | 702 | U | 703 | * | G | 728 | C | 730 | cWW | cWW |
| 6 | IL_4V9F_070 | 4V9F | 0.2189 | 2 | Bulged stacked bases | 0 | G | 1974 | C | 1975 | * | G | 2005 | U | 2008 | cWW | cWW |
| 7 | IL_4Y4O_249 | 4Y4O | 0.0767 | 2 | Bulged stacked bases (H) | 2A | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 8 | IL_5J7L_318 | 5J7L | 0.0000 | 2 | Bulged stacked bases | DA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 9 | IL_4IOA_071 | 4IOA | 0.1011 | 2 | X | G | 1916 | C | 1917 | * | G | 1947 | C | 1950 | cWW | cWW | |
| 10 | IL_4WF9_076 | 4WF9 | 0.1618 | 2 | Bulged stacked bases | X | G | 1960 | C | 1961 | * | G | 1991 | C | 1994 | cWW | cWW |
| 11 | IL_4V8P_249 | 4V8P | 0.1871 | 2 | D1 | G | 2271 | C | 2272 | * | G | 2302 | U | 2305 | cWW | cWW | |
| 12 | IL_397D_001 | 397D | 0.4515 | 3 | Multiple bulged bases | B+A | C | 39 | U | 40 | * | A | 22 | G | 26 | cWW | cWW |
| 13 | IL_4V8P_271 | 4V8P | 0.5819 | 2 | D1 | C | 2869 | U | 2870 | * | A | 2928 | G | 2931 | cWW | cWW | |
| 14 | IL_4WF9_096 | 4WF9 | 0.7029 | 2 | X | C | 2539 | A | 2540 | * | U | 2598 | G | 2601 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GUC | 4 |
| GC*GCAC | 4 |
| GC*GCAU | 2 |
| GU*GGC | 1 |
| CU*AUCUG | 1 |
| CU*AACG | 1 |
| CA*UACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CA | 6 |
| *U | 4 |
| *AC | 2 |
| *G | 1 |
| *UCU | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Single bulged U (4)
- Bulged stacked bases (3)
- Multiple bulged bases (1)
- Single bulged G (1)
- Bulged stacked bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.43 | Max 0.95
Coloring options: