Motif IL_64181.1 Version IL_64181.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_386 | 4V88 | 0.8619 | 1 | Triple sheared related | A6 | SSU rRNA | U | 466 | G | 467 | C | 469 | A | 470 | A | 471 | * | U | 37 | C | 38 | A | 39 | A | 40 | A | 41 | cWW | tSH | cWW | cWW | |
| 2 | IL_1L9A_006 | 1L9A | 0.6570 | 2 | B | signal recognition particle RNA S domain | U | 181 | G | 182 | C | 185 | C | 186 | G | 187 | * | C | 212 | A | 213 | A | 214 | A | 215 | A | 216 | cWW | ntHH | ncWWa | cWW | ||
| 3 | IL_4V88_393 | 4V88 | 0.0000 | 1 | A6 | SSU rRNA | U | 117 | U | 118 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | cWw | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGACAA*UCAAA | 1 |
| UGAACCG*CAAAA | 1 |
| UUAUUU*AUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACA*CAA | 1 |
| GAACC*AAA | 1 |
| UAUU*UUC | 1 |
- Annotations
-
- (2)
- Triple sheared related (1)
- Basepair signature
- cWW-L-R-cWW-cWW-cWW
- Heat map statistics
- Min 0.61 | Avg 0.47 | Max 0.86
Coloring options: