Motif IL_64184.1 Version IL_64184.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_003 | 1FJG | 0.3167 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | |
| 2 | IL_2AW7_003 | 2AW7 | 0.0000 | 2 | A | 16S ribosomal RNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | tSs | cWW |
| 3 | IL_3U5F_004 | 3U5F | 0.3088 | 3 | 6 | 18S rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | cWW | ntSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAAG*UAG | 1 |
| CCUAAC*GGG | 1 |
| GAUUAAG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*A | 1 |
| CUAA*G | 1 |
| AUUAA*G | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_64184.1 | Only in the parent motif |
|---|---|---|---|
| IL_76618.1 Compare | IL_1FJG_003 | IL_3U5F_004, IL_2AW7_003 | IL_1XJR_001 |
| IL_34469.1 Compare | IL_2AW7_003 | IL_3U5F_004, IL_1FJG_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_64184.1 | Only in the child motif |
|---|---|---|---|
| IL_64184.2 Compare | IL_3U5F_004, IL_2AW7_003, IL_1FJG_003 | IL_1S72_053 |
- Annotations
-
- (3)
- Basepair signature
- 07_cWW--tSS-cWW
- Heat map statistics
- Min 0.31 | Avg 0.21 | Max 0.32
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