Motif IL_76618.1 Version IL_76618.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_003 | 1FJG | 0.0000 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | |
| 2 | IL_1XJR_001 | 1XJR | 0.9999 | 1 | Isolated basepair with bulged bases | A | s2m RNA | C | 9 | C | 10 | A | 12 | G | 13 | * | C | 39 | A | 40 | G | 41 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAAG*UAG | 1 |
| CCGAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*A | 1 |
| CGA*A | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_76618.1 | Only in the parent motif |
|---|---|---|---|
| IL_33742.1 Compare | IL_1XJR_001 | IL_1FJG_003 | IL_3F1H_091, IL_2ZJR_087, IL_1S72_082, IL_2OEU_001, IL_1ET4_009, IL_1ET4_007, IL_1ET4_005, IL_1ET4_003, IL_1ET4_001 |
| IL_21059.2 Compare | IL_1FJG_003 | IL_1XJR_001 | IL_3OWZ_002, IL_3OWZ_006, IL_3F1H_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_76618.1 | Only in the child motif |
|---|---|---|---|
| IL_64184.1 Compare | IL_1FJG_003 | IL_1XJR_001 | IL_3U5F_004, IL_2AW7_003 |
| IL_55938.1 Compare | IL_1XJR_001 | IL_1FJG_003 | IL_4A1B_038, IL_2ZJR_018, IL_2ZJR_039, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_2XZM_014, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_1MMS_002, IL_1S72_029, IL_3UXR_092, IL_1MMS_004 |
- Annotations
-
- (1)
- Isolated basepair with bulged bases (1)
- Basepair signature
- Heat map statistics
- Min 1.00 | Avg 0.50 | Max 1.00
Coloring options: