Motif IL_64847.2 Version IL_64847.2 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_069 | 4IOA | 0.9403 | 0 | UAA/GAN with extra pair (H) | X | LSU rRNA | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | * | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | cWW | ntHS | ncWW | |||
| 2 | IL_4QCN_070 | 4QCN | 0.8511 | 0 | A | 23S Ribosomal RNA | U | 1882 | C | 1883 | A | 1884 | A | 1885 | G | 1886 | * | C | 1909 | G | 1910 | A | 1911 | A | 1912 | G | 1913 | cWW | tSH | tHS | cWW | |||
| 3 | IL_4IOA_050 | 4IOA | 0.6953 | 0 | UAA/GAN (H) | X | LSU rRNA | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | * | C | 1389 | G | 1390 | A | 1391 | U | 1392 | G | 1393 | cWW | tWH | ncWW | tHS | cWW | |
| 4 | IL_1VW3_040 | 1VW3 | 0.7054 | 0 | A | 21S ribosomal RNA | C | 1364 | U | 1365 | A | 1366 | A | 1367 | U | 1368 | * | A | 1397 | G | 1398 | A | 1399 | U | 1400 | G | 1401 | cWW | tWH | ncWW | tHS | cWW | ||
| 5 | IL_1S72_089 | 1S72 | 0.2423 | 4 | 0 | LSU rRNA | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | * | G | 2809 | G | 2810 | A | 2811 | A | 2813 | G | 2817 | cWW | tWH | tSH | tHS | cWW | ||
| 6 | IL_4QCN_099 | 4QCN | 0.0000 | 4 | A | 23S Ribosomal RNA | U | 2648 | U | 2649 | G | 2650 | A | 2651 | G | 2652 | * | C | 2787 | A | 2788 | A | 2789 | A | 2791 | G | 2795 | cWW | tWH | tSH | tHS | cWW | ||
| 7 | IL_4IOA_095 | 4IOA | 0.0768 | 4 | tSH-tHS-tHW (H) | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | cWW | tWH | ntSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGAG*CAAGAUGAG | 2 |
| UGAAG*UCAAG | 1 |
| UCAAG*CGAAG | 1 |
| CUAAG*CGAUG | 1 |
| CUAAU*AGAUG | 1 |
| CUGAC*GGAAAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GAU | 2 |
| UGA*AAGAUGA | 2 |
| GAA*CAA | 1 |
| CAA*GAA | 1 |
| UGA*GAAAAGA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_64847.2 | Only in the parent motif |
|---|---|---|---|
| IL_64847.1 Compare | IL_1S72_089, IL_1VW3_040, IL_4IOA_069, IL_4IOA_050, IL_4IOA_095 | IL_4QCN_099, IL_4QCN_070 | IL_4NVV_074, IL_4NVV_098 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- UAA/GAN (H) (1)
- UAA/GAN with extra pair (H) (1)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- cWW-tWH-tSH-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.55 | Max 0.95
Coloring options: