Motif IL_64847.1 Version IL_64847.1 of this group appears in releases 1.14 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-7 | 3-9 | 4-7 | 4-8 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4NVV_098 | 4NVV | 0.0957 | 4 | A | 23S Ribosomal RNA | U | 2648 | U | 2649 | G | 2650 | A | 2651 | G | 2652 | * | C | 2787 | A | 2788 | A | 2789 | A | 2791 | G | 2795 | cWW | tWH | tSH | tHS | cWW | ||||
2 | IL_4IOA_095 | 4IOA | 0.0000 | 4 | tSH-tHS-tHW (H) | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | cWW | tWH | ntSH | tHS | cWW | |||
3 | IL_1S72_089 | 1S72 | 0.2500 | 4 | 0 | LSU rRNA | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | * | G | 2809 | G | 2810 | A | 2811 | A | 2813 | G | 2817 | cWW | tWH | tSH | tHS | cWW | ||||
4 | IL_4IOA_069 | 4IOA | 0.9015 | 0 | UAA/GAN with extra pair (H) | X | LSU rRNA | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | * | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | ncWW | ntSH | cWW | |||||
5 | IL_4NVV_074 | 4NVV | 0.9058 | 0 | A | 23S Ribosomal RNA | C | 1909 | G | 1910 | A | 1911 | A | 1912 | G | 1913 | * | U | 1882 | C | 1883 | A | 1884 | A | 1885 | G | 1886 | cWW | tSH | tHS | cWW | |||||
6 | IL_4IOA_050 | 4IOA | 0.9638 | 0 | UAA/GAN (H) | X | LSU rRNA | C | 1389 | G | 1390 | A | 1391 | U | 1392 | G | 1393 | * | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | cWW | tSH | tHW | ncWW | cWW | |||
7 | IL_1VW3_040 | 1VW3 | 0.9923 | 0 | A | 21S ribosomal RNA | A | 1397 | G | 1398 | A | 1399 | U | 1400 | G | 1401 | * | C | 1364 | U | 1365 | A | 1366 | A | 1367 | U | 1368 | cWW | tSH | tHW | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUGAG*CAAGAUGAG | 2 |
CUGAC*GGAAAAGAG | 1 |
UCAAG*UGAAG | 1 |
UCAAG*CGAAG | 1 |
CGAUG*CUAAG | 1 |
AGAUG*CUAAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGA*AAGAUGA | 2 |
CAA*GAA | 2 |
GAU*UAA | 2 |
UGA*GAAAAGA | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_64847.1 | Only in the parent motif |
---|---|---|---|
IL_39585.1 Compare | IL_1S72_089, IL_4IOA_069, IL_4IOA_050, IL_4IOA_095 | IL_1VW3_040, IL_4NVV_098, IL_4NVV_074 | IL_3V2F_098, IL_3V2F_071 |
Children motifs
Child motif | Common motif instances | Only in IL_64847.1 | Only in the child motif |
---|---|---|---|
IL_64847.2 Compare | IL_1S72_089, IL_1VW3_040, IL_4IOA_069, IL_4IOA_050, IL_4IOA_095 | IL_4NVV_074, IL_4NVV_098 | IL_4QCN_099, IL_4QCN_070 |
- Annotations
-
- (4)
- UAA/GAN (H) (1)
- UAA/GAN with extra pair (H) (1)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- cWW-tSH-tWH-tSH-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.63 | Max 1.00
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