#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-82-93-73-94-74-85-6
1 IL_4NVV_0984NVV0.09574A23S Ribosomal RNAU2648U2649G2650A2651G2652*C2787A2788A2789A2791G2795cWWtWHtSHtHScWW
2 IL_4IOA_0954IOA0.00004tSH-tHS-tHW (H)X LSU rRNAU2615U2616G2617A2618G2619*C2754A2755A2756A2758G2762cWWtWHntSHtHScWW
3 IL_1S72_0891S720.250040 LSU rRNAC2672U2673G2674A2675C2676*G2809G2810A2811A2813G2817cWWtWHtSHtHScWW
4 IL_4IOA_0694IOA0.90150UAA/GAN with extra pair (H)X LSU rRNAU1843C1844A1845A1846G1847*U1870G1871A1872A1873G1874ncWWntSHcWW
5 IL_4NVV_0744NVV0.90580A23S Ribosomal RNAC1909G1910A1911A1912G1913*U1882C1883A1884A1885G1886cWWtSHtHScWW
6 IL_4IOA_0504IOA0.96380UAA/GAN (H)X LSU rRNAC1389G1390A1391U1392G1393*C1364U1365A1366A1367G1368cWWtSHtHWncWWcWW
7 IL_1VW3_0401VW30.99230A21S ribosomal RNAA1397G1398A1399U1400G1401*C1364U1365A1366A1367U1368cWWtSHtHWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUGAG*CAAGAUGAG2
CUGAC*GGAAAAGAG1
UCAAG*UGAAG1
UCAAG*CGAAG1
CGAUG*CUAAG1
AGAUG*CUAAU1
Non-Watson-Crick part of the motif
SequenceCounts
UGA*AAGAUGA2
CAA*GAA2
GAU*UAA2
UGA*GAAAAGA1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusNew id, 1 parentExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_64847.1Only in the parent motif
IL_39585.1
Compare
IL_1S72_089, IL_4IOA_069, IL_4IOA_050, IL_4IOA_095IL_1VW3_040, IL_4NVV_098, IL_4NVV_074IL_3V2F_098, IL_3V2F_071

Children motifs

Child motifCommon motif instancesOnly in IL_64847.1Only in the child motif
IL_64847.2
Compare
IL_1S72_089, IL_1VW3_040, IL_4IOA_069, IL_4IOA_050, IL_4IOA_095IL_4NVV_074, IL_4NVV_098IL_4QCN_099, IL_4QCN_070
Annotations
  • (4)
  • UAA/GAN (H) (1)
  • UAA/GAN with extra pair (H) (1)
  • tSH-tHS-tHW (H) (1)
  • Basepair signature
    cWW-tSH-tWH-tSH-tHS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.63 | Max 1.00
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