Motif IL_64858.1 Version IL_64858.1 of this group appears in releases 3.88 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 1-22 | 2-6 | 2-17 | 3-8 | 4-7 | 4-16 | 6-20 | 7-19 | 9-18 | 10-15 | 11-14 | 12-13 | 16-19 | 17-20 | ||||||||||||||||||||||
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1 | IL_4KZD_007 | 4KZD | 0.1208 | 3 | G-quadruplex | R | RNA (84-MER) | A | 53 | G | 54 | U | 55 | G | 57 | A | 58 | G | 59 | G | 61 | U | 62 | G | 63 | A | 64 | G | 65 | C | 66 | * | G | 19 | A | 20 | A | 21 | G | 22 | G | 23 | C | 25 | G | 26 | G | 27 | G | 28 | U | 29 | cWW | cHW | cWH | cHW | cWH | cHW | cHW | cWW | cWW | cWW | cWH | cWH | ||
2 | IL_4TS2_010 | 4TS2 | 0.0000 | 3 | G-quadruplex | Y+X | Spinach aptamer RNA, bimolecular construct | A | 64 | G | 65 | U | 66 | G | 68 | A | 69 | G | 70 | G | 72 | U | 73 | G | 74 | A | 75 | G | 76 | C | 77 | * | G | 22 | A | 23 | A | 24 | G | 25 | G | 26 | C | 28 | G | 29 | G | 30 | G | 31 | U | 32 | cWW | cHW | cWH | ntSW | cHW | cWH | cHW | cHW | cWW | ncWw | cWW | cWW | cWH | cWH |
3 | IL_7L0Z_005 | 7L0Z | 0.0899 | 3 | G-quadruplex | G | RNA (69-MER) | A | 45 | G | 46 | U | 47 | G | 49 | A | 50 | G | 51 | G | 53 | U | 54 | G | 55 | G | 56 | G | 57 | C | 58 | * | G | 12 | A | 13 | G | 14 | G | 15 | G | 16 | C | 18 | G | 19 | G | 20 | G | 21 | U | 22 | cWW | cHW | cWH | cHW | cWH | cHW | cHW | cWW | ncBW | cWW | cWW | cWH | cWH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGUAGAGUGUGAGC*GAAGGACGGGU | 2 |
AGUAGAGUGUGGGC*GAGGGUCGGGU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUAGAGUGUGAG*AAGGACGGG | 2 |
GUAGAGUGUGGG*AGGGUCGGG | 1 |
- Annotations
-
- G-quadruplex (3)
- Basepair signature
- cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.08 | Max 0.16
Coloring options: