#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 9 10 11 12break 13 14 15 16 17 18 19 20 21 221-222-62-173-84-74-166-207-199-1810-1511-1412-1316-1917-20
1 IL_4KZD_0074KZD0.12083G-quadruplexRRNA (84-MER)A53G54U55G57A58G59G61U62G63A64G65C66*G19A20A21G22G23C25G26G27G28U29cWWcHWcWHcHWcWHcHWcHWcWWcWWcWWcWHcWH
2 IL_4TS2_0104TS20.00003G-quadruplexY+XSpinach aptamer RNA, bimolecular constructA64G65U66G68A69G70G72U73G74A75G76C77*G22A23A24G25G26C28G29G30G31U32cWWcHWcWHntSWcHWcWHcHWcHWcWWncWwcWWcWWcWHcWH
3 IL_7L0Z_0057L0Z0.08993G-quadruplexGRNA (69-MER)A45G46U47G49A50G51G53U54G55G56G57C58*G12A13G14G15G16C18G19G20G21U22cWWcHWcWHcHWcWHcHWcHWcWWncBWcWWcWWcWHcWH

3D structures

Complete motif including flanking bases
SequenceCounts
AGUAGAGUGUGAGC*GAAGGACGGGU2
AGUAGAGUGUGGGC*GAGGGUCGGGU1
Non-Watson-Crick part of the motif
SequenceCounts
GUAGAGUGUGAG*AAGGACGGG2
GUAGAGUGUGGG*AGGGUCGGG1

Release history

Release3.883.893.90
Date2024-09-112024-10-092024-11-06
StatusNew id, no parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • G-quadruplex (3)
  • Basepair signature
    cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.08 | Max 0.16
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1361 s