Motif IL_66414.1 Version IL_66414.1 of this group appears in releases 3.2 to 3.2
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 3-13 | 4-11 | 5-10 | 6-9 | 7-8 | 10-11 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V9F_001 | 4V9F | 0.1349 | 0 | Triple sheared with non-canonical cWW | 0 | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | * | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | cWW | tSH | tSH | tHS | cWw | cWW | |||
2 | IL_4V8P_146 | 4V8P | 0.0873 | 0 | Triple sheared with non-canonical cWW (H) | C2+D1 | G | 16 | U | 17 | G | 18 | G | 19 | A | 20 | U | 21 | A | 22 | * | U | 401 | U | 402 | G | 403 | A | 404 | A | 405 | A | 406 | C | 407 | cWW | tSH | ncSW | tSH | ntHS | cWw | cWW | ||
3 | IL_4Y4O_179 | 4Y4O | 0.0604 | 0 | Triple sheared with non-canonical cWW (H) | 2A | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | ntSH | tSH | tSH | ntHS | cWw | cWW | ||
4 | IL_5J7L_245 | 5J7L | 0.0000 | 0 | Triple sheared with non-canonical cWW | DA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW | ||
5 | IL_4WF9_001 | 4WF9 | 0.0565 | 0 | Triple sheared with non-canonical cWW | X | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 555 | U | 556 | G | 557 | A | 558 | A | 559 | A | 560 | C | 561 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW | ||
6 | IL_4IOA_001 | 4IOA | 0.0790 | 0 | Triple sheared with non-canonical cWW (H) | X | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW | ||
7 | IL_4V5O_093 | 4V5O | 0.6491 | 1 | tWH-tWH-tHW-tHW (H) | BA | G | 137 | G | 138 | A | 139 | U | 140 | A | 141 | A | 142 | C | 143 | * | G | 159 | C | 160 | U | 161 | A | 162 | A | 163 | A | 165 | C | 166 | cWW | cWW | ntWW | ntHW | cWW | ncWH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUGGAUG*CUGAAAC | 4 |
GUGGAUU*AUGAAAU | 1 |
GUGGAUA*UUGAAAC | 1 |
GGAUAAC*GCUAAUAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGGAU*UGAAA | 6 |
GAUAA*CUAAUA | 1 |
Release history
Release | 3.2 |
---|---|
Date | 2018-09-26 |
Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared with non-canonical cWW (H) (3)
- Triple sheared with non-canonical cWW (3)
- tWH-tWH-tHW-tHW (H) (1)
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.22 | Max 0.69
Coloring options: