Motif IL_66414.5 Version IL_66414.5 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 3-13 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_001 | 7A0S | 0.0912 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | cWW | ntSH | tSH | tSH | ntHS | cWw | cWW | |
| 2 | IL_4WF9_001 | 4WF9 | 0.0665 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 555 | U | 556 | G | 557 | A | 558 | A | 559 | A | 560 | C | 561 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW | |
| 3 | IL_7RQB_001 | 7RQB | 0.0000 | 0 | Triple sheared with non-canonical cWW | 1A | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | tSH | tSH | tHS | cWw | cWW | ||
| 4 | IL_5J7L_245 | 5J7L | 0.0576 | 0 | Triple sheared with non-canonical cWW | DA | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW | |
| 5 | IL_5TBW_015 | 5TBW | 0.0841 | 0 | Triple sheared with non-canonical cWW | 4+1 | 5.8S rRNA | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | * | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | cWW | ntSH | tSH | ncSW | tSH | ntHS | cWw | cWW |
| 6 | IL_4V9F_001 | 4V9F | 0.1158 | 0 | Triple sheared with non-canonical cWW | 0 | LSU rRNA | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | * | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | cWW | tSH | tSH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGAUG*CUGAAAC | 4 |
| ACGGAUC*GUGAAAU | 1 |
| GUGGAUU*AUGAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGAU*UGAAA | 5 |
| CGGAU*UGAAA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared with non-canonical cWW (6)
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.07 | Max 0.13
Coloring options: