Motif IL_66584.1 Version IL_66584.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_063 | 4IOA | 0.1415 | 1 | tSH-tSH-tHH-tHS (H) | X | C | 1703 | G | 1704 | U | 1705 | A | 1706 | A | 1707 | C | 1708 | * | G | 1713 | A | 1714 | A | 1715 | A | 1717 | A | 1718 | G | 1719 | cWW | tSH | tHH | tHS | cWW | |
| 2 | IL_5J7L_308 | 5J7L | 0.1253 | 1 | tSH-tSH-tHH-tHS | DA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 3 | IL_4Y4O_241 | 4Y4O | 0.1238 | 1 | tSH-tSH-tHH-tHS (H) | 2A | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 4 | IL_4V9F_063 | 4V9F | 0.0000 | 1 | tSH-tSH-tHH-tHS | 0 | C | 1764 | G | 1765 | U | 1766 | A | 1767 | C | 1768 | C | 1769 | * | G | 1774 | A | 1775 | A | 1776 | A | 1778 | A | 1779 | G | 1780 | cWW | tSH | tHH | tHS | cWW | |
| 5 | IL_4V8P_240 | 4V8P | 0.1231 | 1 | D1 | C | 1942 | G | 1943 | U | 1944 | A | 1945 | A | 1946 | C | 1947 | * | G | 1952 | G | 1953 | A | 1954 | A | 1956 | A | 1957 | G | 1958 | cWW | tSH | tHH | tHS | cWW | ||
| 6 | IL_3FTE_001 | 3FTE | 0.5202 | 0 | Quadruple sheared | D+C | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | tHS | cWW | |
| 7 | IL_3R9W_001 | 3R9W | 0.6084 | 0 | Quadruple sheared | B | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515||||2_455 | G | 1516||||2_455 | G | 1517||||2_455 | A | 1518||||2_455 | A | 1519||||2_455 | C | 1520||||2_455 | cWW | tSH | ntSH | ntHS | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAC*GGAGAAG | 2 |
| GGGAAC*GGGAAC | 2 |
| CGUAAC*GAAGAAG | 1 |
| CGUACC*GAAGAAG | 1 |
| CGUAAC*GGAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*GAGAA | 2 |
| GGAA*GGAA | 2 |
| GUAA*AAGAA | 1 |
| GUAC*AAGAA | 1 |
| GUAA*GAUAA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Quadruple sheared (2)
- tSH-tSH-tHH-tHS (H) (2)
- tSH-tSH-tHH-tHS (2)
- (1)
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.31 | Max 0.67
Coloring options: