Motif IL_68511.1 Version IL_68511.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_466 | 4V88 | 0.5486 | 1 | Non canonical cWW and near pair | A6 | SSU rRNA | C | 1644 | G | 1645 | C | 1646 | U | 1647 | * | A | 1753 | A | 1754 | A | 1756||A | G | 1757 | cWW | ncWW | ntWW | cWW |
| 2 | IL_1CSL_001 | 1CSL | 0.0578 | 1 | A+B | RNA (13-mer) + RNA (15-mer) | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | cWW | cWH | cWW | |
| 3 | IL_1DUQ_001 | 1DUQ | 0.0000 | 1 | A+B | THE REV BINDING ELEMENT | G | 104 | G | 105 | G | 106 | C | 107 | * | G | 123 | G | 124 | A | 126 | C | 127 | cWW | cWW | cWH | cWW | |
| 4 | IL_7WIE_001 | 7WIE | 0.2270 | 0 | V | RNA (50-MER) | G | 49 | A | 50 | G | 51 | A | 52 | * | U | 10 | G | 11 | G | 12 | U | 13 | cWW | cWW | cWH | cWW | |
| 5 | IL_6CZR_168 | 6CZR | 0.2564 | 0 | Tandem non-canonical cWW pairs | 1a | SSU rRNA | C | 1395 | A | 1396 | U | 1397 | G | 1398 | * | U | 1463 | G | 1464 | G | 1465 | G | 1466 | cWW | cWW | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 2 |
| CGCU*AAAAG | 1 |
| GAGA*UGGU | 1 |
| CAUG*UGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 2 |
| GC*AAA | 1 |
| AG*GG | 1 |
| AU*GG | 1 |
- Annotations
-
- (3)
- Non canonical cWW and near pair (1)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- cWW-cWW-cWH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.29 | Max 0.63
Coloring options: