Motif IL_70627.3 Version IL_70627.3 of this group appears in releases 3.89 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 3-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_052 | 4V9F | 0.7732 | 2 | UAA/GAN | 0 | LSU rRNA | C | 1483 | G | 1484 | A | 1485 | A | 1487 | U | 1488 | G | 1489 | * | C | 1456 | U | 1457 | A | 1458 | G | 1460 | cWW | tHW | cWW |
| 2 | IL_4GXY_004 | 4GXY | 0.0000 | 1 | A | Adenosylcobalamin riboswitch | G | 148 | G | 149 | A | 150 | G | 151 | U | 152 | C | 153 | * | G | 76 | U | 77 | G | 78 | C | 80 | cWW | tHW | cWW | |
| 3 | IL_6VMY_002 | 6VMY | 0.1594 | 1 | A | Cobalamin riboswitch | A | 297 | G | 298 | A | 299 | G | 300 | C | 301 | C | 302 | * | G | 279 | U | 280 | A | 281 | U | 283 | cWW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAAUG*CUAAG | 1 |
| GGAGUC*GUGAC | 1 |
| AGAGCC*GUAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAU*UAA | 1 |
| GAGU*UGA | 1 |
| GAGC*UAA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- UAA/GAN (1)
- Basepair signature
- cWW-L-R-tHW-cWW
- Heat map statistics
- Min 0.16 | Avg 0.39 | Max 0.82
Coloring options: