#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 81-82-73-65-6
1 IL_5TBW_0995TBW0.26570Isolated tHS basepair with bulges1 LSU rRNAA2686G2687U2688A2689G2690*C2666A2667U2668cWWtSHcWW
2 IL_8C3A_1088C3A0.26520Isolated tHS basepair with bulges (H)1 LSU rRNAA2658G2659U2660A2661G2662*C2638A2639U2640cWWtSHcWW
3 IL_4WF9_0864WF90.00000Isolated tHS basepair with bulgesX LSU rRNAC2344A2345U2346A2347G2348*C2324A2325G2326cWWtSHcWW
4 IL_4V9F_0804V9F0.20040Isolated tHS basepair with bulges0 LSU rRNAC2351G2352A2353A2354G2355*C2331A2332G2333cWWtSHcWW
5 IL_8VTW_0878VTW0.42570Isolated tHS basepair with bulges (H)1A LSU rRNAC2317G2318G2319A2320G2321*C2297A2298G2299cWWtSHcWW
6 IL_5J7L_3325J7L0.69660DA LSU rRNAA2317G2318G2319U2320U2321*A2297A2298U2299cWWtSHntSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGUAG*CAU2
CAUAG*CAG1
CGAAG*CAG1
CGGAG*CAG1
AGGUU*AAU1
Non-Watson-Crick part of the motif
SequenceCounts
GUA*A2
AUA*A1
GAA*A1
GGA*A1
GGU*A1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated tHS basepair with bulges (3)
  • Isolated tHS basepair with bulges (H) (2)
  • (1)
  • Basepair signature
    cWW-tSH-L-cWW-L
    Heat map statistics
    Min 0.14 | Avg 0.38 | Max 0.78
    Help

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