Motif IL_71241.1 Version IL_71241.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 5-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5TBW_099 | 5TBW | 0.2657 | 0 | Isolated tHS basepair with bulges | 1 | LSU rRNA | A | 2686 | G | 2687 | U | 2688 | A | 2689 | G | 2690 | * | C | 2666 | A | 2667 | U | 2668 | cWW | tSH | cWW | |
2 | IL_8C3A_108 | 8C3A | 0.2652 | 0 | Isolated tHS basepair with bulges (H) | 1 | LSU rRNA | A | 2658 | G | 2659 | U | 2660 | A | 2661 | G | 2662 | * | C | 2638 | A | 2639 | U | 2640 | cWW | tSH | cWW | |
3 | IL_4WF9_086 | 4WF9 | 0.0000 | 0 | Isolated tHS basepair with bulges | X | LSU rRNA | C | 2344 | A | 2345 | U | 2346 | A | 2347 | G | 2348 | * | C | 2324 | A | 2325 | G | 2326 | cWW | tSH | cWW | |
4 | IL_4V9F_080 | 4V9F | 0.2004 | 0 | Isolated tHS basepair with bulges | 0 | LSU rRNA | C | 2351 | G | 2352 | A | 2353 | A | 2354 | G | 2355 | * | C | 2331 | A | 2332 | G | 2333 | cWW | tSH | cWW | |
5 | IL_8VTW_087 | 8VTW | 0.4257 | 0 | Isolated tHS basepair with bulges (H) | 1A | LSU rRNA | C | 2317 | G | 2318 | G | 2319 | A | 2320 | G | 2321 | * | C | 2297 | A | 2298 | G | 2299 | cWW | tSH | cWW | |
6 | IL_5J7L_332 | 5J7L | 0.6966 | 0 | DA | LSU rRNA | A | 2317 | G | 2318 | G | 2319 | U | 2320 | U | 2321 | * | A | 2297 | A | 2298 | U | 2299 | cWW | tSH | ntSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGUAG*CAU | 2 |
CAUAG*CAG | 1 |
CGAAG*CAG | 1 |
CGGAG*CAG | 1 |
AGGUU*AAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUA*A | 2 |
AUA*A | 1 |
GAA*A | 1 |
GGA*A | 1 |
GGU*A | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated tHS basepair with bulges (3)
- Isolated tHS basepair with bulges (H) (2)
- (1)
- Basepair signature
- cWW-tSH-L-cWW-L
- Heat map statistics
- Min 0.14 | Avg 0.38 | Max 0.78
Coloring options: