RNA 3D Hub //

Motif IL_71457.1 Version IL_71457.1 of this group appears in releases 3.88 to 3.88

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 101-105-68-9
1 IL_7A0S_0347A0S0.17850SSU/LSU pseudoknotX LSU rRNAU1015C1016C1017C1018U1019A1020A1021A1022*U1161A1162cWWncSHcWW
2 IL_5J7L_2785J7L0.12370SSU/LSU pseudoknotDA LSU rRNAU1004C1005C1006C1007A1008A1009A1010G1011*C1150A1151cWWcSHcWW
3 IL_4WF9_0374WF90.15220SSU/LSU pseudoknotX LSU rRNAU1048C1049C1050C1051A1052A1053A1054A1055*U1194A1195cWWncSHcWW
4 IL_8VTW_0368VTW0.00000SSU/LSU pseudoknot (H)1A LSU rRNAC1004C1005C1006C1007C1008A1009A1010G1011*C1150G1151cWWcSHcWW
5 IL_4V9F_0384V9F0.12140SSU/LSU pseudoknot0 LSU rRNAU1101C1102C1103C1104C1105A1106A1107G1108*C1254A1255cWWcSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCCCUAAA*UA1
UCCCAAAG*CA1
UCCCAAAA*UA1
CCCCCAAG*CG1
UCCCCAAG*CA1
Non-Watson-Crick part of the motif
SequenceCounts
CCCAAA*2
CCCCAA*2
CCCUAA*1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • SSU/LSU pseudoknot (4)
  • SSU/LSU pseudoknot (H) (1)
    • Basepair signature
    cWW-L-cWW-L-L-R-cSH
    Heat map statistics
    Min 0.09 | Avg 0.14 | Max 0.26
    Help

    Coloring options:

    IL_7A0S_034:IL_7A0S_034 = 0IL_7A0S_034:IL_5J7L_278 = 0.1649IL_7A0S_034:IL_4WF9_037 = 0.1975IL_7A0S_034:IL_8VTW_036 = 0.1785IL_7A0S_034:IL_4V9F_038 = 0.2556IL_5J7L_278:IL_7A0S_034 = 0.1649IL_5J7L_278:IL_5J7L_278 = 0IL_5J7L_278:IL_4WF9_037 = 0.088IL_5J7L_278:IL_8VTW_036 = 0.1237IL_5J7L_278:IL_4V9F_038 = 0.2055IL_4WF9_037:IL_7A0S_034 = 0.1975IL_4WF9_037:IL_5J7L_278 = 0.088IL_4WF9_037:IL_4WF9_037 = 0IL_4WF9_037:IL_8VTW_036 = 0.1522IL_4WF9_037:IL_4V9F_038 = 0.2331IL_8VTW_036:IL_7A0S_034 = 0.1785IL_8VTW_036:IL_5J7L_278 = 0.1237IL_8VTW_036:IL_4WF9_037 = 0.1522IL_8VTW_036:IL_8VTW_036 = 0IL_8VTW_036:IL_4V9F_038 = 0.1214IL_4V9F_038:IL_7A0S_034 = 0.2556IL_4V9F_038:IL_5J7L_278 = 0.2055IL_4V9F_038:IL_4WF9_037 = 0.2331IL_4V9F_038:IL_8VTW_036 = 0.1214IL_4V9F_038:IL_4V9F_038 = 0IL_7A0S_034IL_5J7L_278IL_4WF9_037IL_8VTW_036IL_4V9F_038Discrepancy0.000.050.100.150.200.25
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