Motif IL_71985.1 Version IL_71985.1 of this group appears in releases 0.5 to 0.5
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_066 | 1S72 | 0.0000 | 1 | Minor groove platform, major groove intercalation (H) | 0 | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
2 | IL_3Q1Q_003 | 3Q1Q | 0.3634 | 2 | B | G | 103 | A | 106 | G | 107 | * | C | 209 | C | 210 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCAG*CG | 1 |
GACAG*CC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CA* | 1 |
ACA* | 1 |
Release history
Release | 0.5 |
---|---|
Date | 2011-12-08 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_71985.1 | Only in the parent motif |
---|---|---|---|
IL_87014.1 Compare | IL_1S72_066 | IL_3Q1Q_003 | IL_1FJG_039, IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_2ZJR_067, IL_1FJG_051 |
Children motifs
Child motif | Common motif instances | Only in IL_71985.1 | Only in the child motif |
---|---|---|---|
IL_94430.1 Compare | IL_3Q1Q_003, IL_1S72_066 | IL_2QBG_072, IL_3UXR_032, IL_2AW7_046, IL_3UXR_055, IL_2ZJR_105, IL_2AW7_007, IL_3UXR_068, IL_2ZJR_067, IL_4A1B_086, IL_2XXA_013, IL_2XXA_006, IL_3U5H_145 |
- Annotations
-
- Minor groove platform, major groove intercalation (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.36 | Avg 0.18 | Max 0.36
Coloring options: