Motif IL_72032.1 Version IL_72032.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-8 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1J2B_001 | 1J2B | 0.6647 | 0 | C | tRNA(Val) | C | 926 | G | 927 | C | 928 | C | 929 | * | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | cWW | cWW | ||||
| 2 | IL_4CUX_084 | 4CUX | 0.5766 | 2 | 2 | 18S RRNA | U | 1752 | A | 1753 | A | 1754 | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | A | 1648 | cWW | cWW | cWW | |||
| 3 | IL_4W21_043 | 4W21 | 0.3996 | 1 | 5 | 28S ribosomal RNA | C | 1082 | U | 1083 | C | 1084 | C | 1085 | * | G | 1212 | G | 1213 | C | 1215 | C | 1216 | G | 1217 | cWW | cWW | ||||
| 4 | IL_4W21_027 | 4W21 | 0.0000 | 0 | 5 | 28S ribosomal RNA | G | 493 | U | 494 | C | 495 | G | 496 | * | C | 657 | C | 658 | G | 659 | A | 660 | C | 661 | ncWW | cWW | ||||
| 5 | IL_4W21_054 | 4W21 | 0.2610 | 0 | 5 | 28S ribosomal RNA | G | 1487 | G | 1488 | G | 1489 | G | 1490 | * | C | 1474 | G | 1475 | C | 1476 | C | 1477 | C | 1478 | ncWW | cWw | cWW | |||
| 6 | IL_4CUV_104 | 4CUV | 0.4228 | 0 | 1 | 25S RRNA | G | 2435 | U | 2436 | G | 2437 | A | 2438 | * | U | 2508 | U | 2509 | A | 2510 | C | 2511 | C | 2512 | cWW | ncWW | ncWW | cWW | ||
| 7 | IL_1MFQ_001 | 1MFQ | 0.7591 | 0 | A | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | cWW | cWW | ||||
| 8 | IL_4W23_015 | 4W23 | 0.7937 | 0 | 2 | 18S ribosomal RNA | C | 295 | U | 296 | A | 297 | G | 298 | * | C | 223 | A | 224 | G | 225 | U | 287 | G | 288 | ncWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCC*GGAGG | 1 |
| CGCUA*UAAAAG | 1 |
| CUCC*GGCCCG | 1 |
| GUCG*CCGAC | 1 |
| GGGG*CGCCC | 1 |
| GUGA*UUACC | 1 |
| UAAG*CAGUA | 1 |
| CUAG*CAGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*GAG | 1 |
| GCU*AAAA | 1 |
| UC*GCCC | 1 |
| UC*CGA | 1 |
| GG*GCC | 1 |
| UG*UAC | 1 |
| AA*AGU | 1 |
| UA*AGU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_72032.1 | Only in the parent motif |
|---|---|---|---|
| IL_10743.1 Compare | IL_1MFQ_001, IL_4CUV_104, IL_1J2B_001 | IL_4CUX_084, IL_4W21_054, IL_4W23_015, IL_4W21_027, IL_4W21_043 | IL_1VX2_015, IL_1U6B_004, IL_1VWW_129 |
| IL_69536.4 Compare | IL_4CUX_084 | IL_4CUV_104, IL_4W21_054, IL_4W21_027, IL_4W21_043, IL_1J2B_001, IL_1MFQ_001, IL_4W23_015 | IL_4QCN_102, IL_4IOA_098, IL_2QBG_103 |
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.26 | Avg 0.59 | Max 0.97
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