#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 121-122-114-95-86-7
1 IL_4NVV_0684NVV0.27121A23S Ribosomal RNAC1733G1734U1735A1736A1737C1738*G1743G1744A1745A1747A1748G1749cWWtSHncBWtHScWW
2 IL_2QBG_0662QBG0.08901B23S rRNAC1686G1687U1688A1689A1690C1691*G1696G1697A1698A1700A1701G1702cWWtSHtHHtHScWW
3 IL_4IOA_0634IOA0.07451tSH-tSH-tHH-tHS (H)X LSU rRNAC1703G1704U1705A1706A1707C1708*G1713A1714A1715A1717A1718G1719cWWtSHtHHtHScWW
4 IL_3U5H_0863U5H0.00001525S rRNAC1918G1919U1920A1921A1922C1923*G1928G1929A1930A1932A1933G1934cWWtSHtHHtHScWW
5 IL_1S72_0631S720.106710 LSU rRNAC1764G1765U1766A1767C1768C1769*G1774A1775A1776A1778A1779G1780cWWtSHtHHtHScWW
6 IL_4A1B_0824A1B0.13251126S RRNAC1942G1943U1944A1945A1946C1947*G1952G1953A1954A1956A1957G1958cWWtSHtHHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGUAAC*GGAGAAG2
CGUAAC*GGAUAAG2
CGUAAC*GAAGAAG1
CGUACC*GAAGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAA*GAGAA2
GUAA*GAUAA2
GUAA*AAGAA1
GUAC*AAGAA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_72158.4Only in the parent motif
IL_72158.3
Compare
IL_3U5H_086, IL_1S72_063, IL_4IOA_063, IL_4A1B_082, IL_2QBG_066IL_4NVV_068IL_3V2F_065

Children motifs

Child motifCommon motif instancesOnly in IL_72158.4Only in the child motif
IL_72158.5
Compare
IL_4NVV_068, IL_2QBG_066, IL_3U5H_086, IL_4IOA_063, IL_1S72_063, IL_4A1B_082IL_4CUV_085
Annotations
  • (5)
  • tSH-tSH-tHH-tHS (H) (1)
  • Basepair signature
    cWW-tSH-tSH-tHH-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.15 | Max 0.31
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