Motif IL_72158.7 Version IL_72158.7 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_082 | 4A1B | 0.1325 | 1 | 1 | 26S RRNA | C | 1942 | G | 1943 | U | 1944 | A | 1945 | A | 1946 | C | 1947 | * | G | 1952 | G | 1953 | A | 1954 | A | 1956 | A | 1957 | G | 1958 | cWW | tSH | tHH | tHS | cWW | |
| 2 | IL_4CUV_085 | 4CUV | 0.1044 | 1 | 1 | 25S RRNA | C | 1918 | G | 1919 | U | 1920 | A | 1921 | A | 1922 | C | 1923 | * | G | 1928 | G | 1929 | A | 1930 | A | 1932 | A | 1933 | G | 1934 | cWW | tSH | tHH | tHS | cWW | |
| 3 | IL_1VX6_087 | 1VX6 | 0.1367 | 1 | A | 28S ribosomal RNA | C | 2186 | G | 2187 | U | 2188 | A | 2189 | A | 2190 | C | 2191 | * | G | 2196 | G | 2197 | A | 2198 | A | 2200 | A | 2201 | G | 2202 | cWW | tSH | tHH | tHS | cWW | |
| 4 | IL_1S72_063 | 1S72 | 0.1067 | 1 | 0 | LSU rRNA | C | 1764 | G | 1765 | U | 1766 | A | 1767 | C | 1768 | C | 1769 | * | G | 1774 | A | 1775 | A | 1776 | A | 1778 | A | 1779 | G | 1780 | cWW | tSH | tHH | tHS | cWW | |
| 5 | IL_3U5H_086 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | C | 1918 | G | 1919 | U | 1920 | A | 1921 | A | 1922 | C | 1923 | * | G | 1928 | G | 1929 | A | 1930 | A | 1932 | A | 1933 | G | 1934 | cWW | tSH | tHH | tHS | cWW | |
| 6 | IL_4IOA_063 | 4IOA | 0.0745 | 1 | tSH-tSH-tHH-tHS (H) | X | LSU rRNA | C | 1703 | G | 1704 | U | 1705 | A | 1706 | A | 1707 | C | 1708 | * | G | 1713 | A | 1714 | A | 1715 | A | 1717 | A | 1718 | G | 1719 | cWW | tSH | tHH | tHS | cWW |
| 7 | IL_2QBG_066 | 2QBG | 0.0890 | 1 | B | 23S rRNA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 8 | IL_4W21_110 | 4W21 | 0.1389 | 1 | 5 | 28S ribosomal RNA | C | 2867 | G | 2868 | U | 2869 | A | 2870 | A | 2871 | C | 2872 | * | G | 2877 | G | 2878 | A | 2879 | A | 2881 | A | 2882 | G | 2883 | cWW | tSH | ntHH | tHS | cWW | |
| 9 | IL_4QCN_064 | 4QCN | 0.2644 | 1 | A | 23S Ribosomal RNA | C | 1733 | G | 1734 | U | 1735 | A | 1736 | A | 1737 | C | 1738 | * | G | 1743 | G | 1744 | A | 1745 | A | 1747 | A | 1748 | G | 1749 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAC*GGAUAAG | 4 |
| CGUAAC*GGAGAAG | 2 |
| CGUAAC*GGAAAAG | 1 |
| CGUACC*GAAGAAG | 1 |
| CGUAAC*GAAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*GAUAA | 4 |
| GUAA*GAGAA | 2 |
| GUAA*GAAAA | 1 |
| GUAC*AAGAA | 1 |
| GUAA*AAGAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_72158.7 | Only in the parent motif |
|---|---|---|---|
| IL_72158.6 Compare | IL_4CUV_085, IL_4QCN_064, IL_2QBG_066, IL_3U5H_086, IL_4IOA_063, IL_1S72_063, IL_1VX6_087, IL_4A1B_082 | IL_4W21_110 | IL_1VWW_113 |
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- tSH-tSH-tHH-tHS (H) (1)
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.15 | Max 0.30
Coloring options: