Motif IL_72641.1 Version IL_72641.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-6 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4ERD_003 | 4ERD | 0.8524 | 2 | C+D | RNA (22-mer) | G | 146 | G | 147 | A | 148 | * | U | 119 | C | 120 | C | 123 | cWW | ntSs | cWW | |
2 | IL_2ZI0_001 | 2ZI0 | 0.0000 | 0 | Isolated near basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | |
3 | IL_4J39_001 | 4J39 | 0.7658 | 0 | CC cWW | B | RNA (19-mer) | G | 9 | C | 10 | C | 11 | * | G | 9||||4_555 | C | 10||||4_555 | C | 11||||4_555 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGA*UCGAC | 1 |
UUA*UUA | 1 |
GCC*GCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*CGA | 1 |
U*U | 1 |
C*C | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_72641.1 | Only in the parent motif |
---|---|---|---|
IL_17212.2 Compare | IL_4ERD_003, IL_4J39_001, IL_2ZI0_001 | IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025 |
Children motifs
Child motif | Common motif instances | Only in IL_72641.1 | Only in the child motif |
---|---|---|---|
IL_72641.2 Compare | IL_4ERD_003, IL_2ZI0_001 | IL_4J39_001 | IL_4CUX_020 |
IL_92886.1 Compare | IL_4J39_001 | IL_4ERD_003, IL_2ZI0_001 |
- Annotations
-
- Isolated near basepair (1)
- (1)
- CC cWW (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.77 | Avg 0.56 | Max 0.89
Coloring options: