Motif IL_17212.2 Version IL_17212.2 of this group appears in releases 1.12 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4J39_001 | 4J39 | 0.5175 | 0 | Isolated non-canonical cWW pair | B | RNA (19-mer) | G | 9||||4_555 | C | 10||||4_555 | C | 11||||4_555 | * | G | 9 | C | 10 | C | 11 | cWW | cWW | ||
| 2 | IL_2QBG_045 | 2QBG | 0.1727 | 1 | B | 23S rRNA | A | 1247 | U | 1249 | G | 1250 | * | C | 1196 | G | 1197 | U | 1198 | cWW | cSW | cWW | ||
| 3 | IL_3V2F_042 | 3V2F | 0.0994 | 1 | A | 23S Ribosomal RNA | A | 1247 | U | 1249 | G | 1250 | * | C | 1196 | G | 1197 | U | 1198 | cWW | cSW | cWW | ||
| 4 | IL_4IOA_043 | 4IOA | 0.0000 | 1 | Isolated cWS basepair (H) | X | LSU rRNA | A | 1260 | U | 1262 | G | 1263 | * | C | 1210 | G | 1211 | U | 1212 | cWW | cSW | cWW | |
| 5 | IL_1S72_046 | 1S72 | 0.1209 | 1 | Isolated cWS basepair (H) | 0 | LSU rRNA | G | 1351 | C | 1353 | G | 1354 | * | C | 1301 | G | 1302 | C | 1303 | cWW | cSW | cWW | |
| 6 | IL_3U5H_062 | 3U5H | 0.1389 | 1 | 5 | 25S rRNA | A | 1428 | U | 1430 | G | 1431 | * | C | 1376 | G | 1377 | U | 1378 | cWW | cSW | cWW | ||
| 7 | IL_3V2F_030 | 3V2F | 0.2896 | 0 | A | 23S Ribosomal RNA | A | 870 | U | 871 | A | 872 | * | U | 905 | G | 906 | U | 907 | cWW | ncSW | cWW | ||
| 8 | IL_3U5H_052 | 3U5H | 0.3063 | 0 | 5 | 25S rRNA | U | 1123 | U | 1124 | U | 1125 | * | A | 1133 | G | 1134 | A | 1135 | cWW | ncSW | cWW | ||
| 9 | IL_2ZI0_001 | 2ZI0 | 0.5791 | 0 | Isolated near basepair | D+C | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | ||
| 10 | IL_3V2F_025 | 3V2F | 0.8387 | 1 | A | 23S Ribosomal RNA | C | 844 | G | 845 | C | 846 | * | G | 931 | A | 933 | G | 934 | cWW | cWW | |||
| 11 | IL_4ERD_003 | 4ERD | 0.9149 | 2 | D+C | RNA (22-mer) | U | 119 | C | 120 | C | 123 | * | G | 146 | G | 147 | A | 148 | cWW | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUG*CGU | 4 |
| GCC*GCC | 1 |
| GACG*CGC | 1 |
| AUA*UGU | 1 |
| UUU*AGA | 1 |
| UUA*UUA | 1 |
| CGC*GGAG | 1 |
| UCGAC*GGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU*G | 4 |
| U*G | 2 |
| C*C | 1 |
| AC*G | 1 |
| U*U | 1 |
| G*GA | 1 |
| CGA*G | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_17212.2 | Only in the parent motif |
|---|---|---|---|
| IL_17212.1 Compare | IL_4ERD_003, IL_1S72_046, IL_3U5H_052, IL_2ZI0_001, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025 | IL_4J39_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_17212.2 | Only in the child motif |
|---|---|---|---|
| IL_67813.1 Compare | IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045 | IL_4ERD_003, IL_2ZI0_001, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025, IL_4J39_001 | IL_2AW7_049, IL_3U5F_067, IL_4NVV_044, IL_4BPP_065, IL_3U5F_093, IL_3U5F_065, IL_4NVV_032, IL_1VW3_035, IL_1FJG_041, IL_1VW3_070 |
| IL_72641.1 Compare | IL_4ERD_003, IL_4J39_001, IL_2ZI0_001 | IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025 |
- Annotations
-
- (7)
- Isolated cWS basepair (H) (2)
- Isolated near basepair (1)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cSW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.49 | Max 0.94
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