Motif IL_17212.2 Version IL_17212.2 of this group appears in releases 1.12 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-5	3-4	3-5
1	IL_4J39_001	4J39	0.5175	0	Isolated non-canonical cWW pair	B	RNA (19-mer)	G	9\|\|\|\|4_555	C	10\|\|\|\|4_555	C	11\|\|\|\|4_555	*	G	9	C	10	C	11	cWW		cWW
2	IL_2QBG_045	2QBG	0.1727	1		B	23S rRNA	A	1247	U	1249	G	1250	*	C	1196	G	1197	U	1198	cWW	cSW	cWW
3	IL_3V2F_042	3V2F	0.0994	1		A	23S Ribosomal RNA	A	1247	U	1249	G	1250	*	C	1196	G	1197	U	1198	cWW	cSW	cWW
4	IL_4IOA_043	4IOA	0.0000	1	Isolated cWS basepair (H)	X	LSU rRNA	A	1260	U	1262	G	1263	*	C	1210	G	1211	U	1212	cWW	cSW	cWW
5	IL_1S72_046	1S72	0.1209	1	Isolated cWS basepair (H)	0	LSU rRNA	G	1351	C	1353	G	1354	*	C	1301	G	1302	C	1303	cWW	cSW	cWW
6	IL_3U5H_062	3U5H	0.1389	1		5	25S rRNA	A	1428	U	1430	G	1431	*	C	1376	G	1377	U	1378	cWW	cSW	cWW
7	IL_3V2F_030	3V2F	0.2896	0		A	23S Ribosomal RNA	A	870	U	871	A	872	*	U	905	G	906	U	907	cWW	ncSW	cWW
8	IL_3U5H_052	3U5H	0.3063	0		5	25S rRNA	U	1123	U	1124	U	1125	*	A	1133	G	1134	A	1135	cWW	ncSW	cWW
9	IL_2ZI0_001	2ZI0	0.5791	0	Isolated near basepair	D+C	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11	cWW		cWW
10	IL_3V2F_025	3V2F	0.8387	1		A	23S Ribosomal RNA	C	844	G	845	C	846	*	G	931	A	933	G	934	cWW		cWW
11	IL_4ERD_003	4ERD	0.9149	2		D+C	RNA (22-mer)	U	119	C	120	C	123	*	G	146	G	147	A	148	cWW		cWW	ntsS

3D structures

Complete motif including flanking bases

Sequence	Counts
AGUG*CGU	4
GCC*GCC	1
GACG*CGC	1
AUA*UGU	1
UUU*AGA	1
UUA*UUA	1
CGC*GGAG	1
UCGAC*GGA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GU*G	4
U*G	2
C*C	1
AC*G	1
U*U	1
G*GA	1
CGA*G	1

Release history

Release	1.12	1.13
Date	2014-03-01	2014-03-29
Status	Updated, 1 parent	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_17212.2	Only in the parent motif
IL_17212.1 Compare	IL_4ERD_003, IL_1S72_046, IL_3U5H_052, IL_2ZI0_001, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025	IL_4J39_001

Children motifs

Child motif	Common motif instances	Only in IL_17212.2	Only in the child motif
IL_67813.1 Compare	IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045	IL_4ERD_003, IL_2ZI0_001, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025, IL_4J39_001	IL_2AW7_049, IL_3U5F_067, IL_4NVV_044, IL_4BPP_065, IL_3U5F_093, IL_3U5F_065, IL_4NVV_032, IL_1VW3_035, IL_1FJG_041, IL_1VW3_070
IL_72641.1 Compare	IL_4ERD_003, IL_4J39_001, IL_2ZI0_001	IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025

Annotations: (7)
Isolated cWS basepair (H) (2)
Isolated near basepair (1)
Isolated non-canonical cWW pair (1)
Basepair signature: cWW-cSW-cWW
Heat map statistics: Min 0.10 | Avg 0.49 | Max 0.94

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