Motif IL_72641.2 Version IL_72641.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZI0_001 | 2ZI0 | 0.7184 | 0 | Isolated near basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | ||
| 2 | IL_4CUX_020 | 4CUX | 0.0000 | 4 | 2 | 18S RRNA | U | 345 | G | 346 | G | 347 | * | C | 317 | U | 318 | A | 323 | ncWW | ncWW | cWW | ||
| 3 | IL_4ERD_003 | 4ERD | 0.7412 | 2 | C+D | RNA (22-mer) | G | 146 | G | 147 | A | 148 | * | U | 119 | C | 120 | C | 123 | cWW | ntSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUA*UUA | 1 |
| CUUUCGA*UGG | 1 |
| GGA*UCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 1 |
| UUUCG*G | 1 |
| G*CGA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_72641.2 | Only in the parent motif |
|---|---|---|---|
| IL_72641.1 Compare | IL_4ERD_003, IL_2ZI0_001 | IL_4CUX_020 | IL_4J39_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_72641.2 | Only in the child motif |
|---|---|---|---|
| IL_79398.1 Compare | IL_4ERD_003 | IL_4CUX_020, IL_2ZI0_001 | IL_4J39_001, IL_1VX6_029 |
| IL_82600.1 Compare | IL_4CUX_020 | IL_4ERD_003, IL_2ZI0_001 | IL_4KQY_005, IL_1VWW_035 |
| IL_37688.1 Compare | IL_2ZI0_001 | IL_4ERD_003, IL_4CUX_020 | IL_3U5F_012, IL_4CUX_036, IL_4CUX_067, IL_1VWW_097 |
- Annotations
-
- (2)
- Isolated near basepair (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.72 | Avg 0.51 | Max 0.85
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