Motif IL_73000.1 Version IL_73000.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3UCZ_004 | 3UCZ | 0.4722 | 0 | R | G | 76 | U | 77 | * | A | 61 | A | 62 | A | 63 | C | 64 | cWW | cWW | ncSW | ncSH | |
| 2 | IL_2AW7_044 | 2AW7 | 0.0000 | 2 | A | G | 933 | A | 935 | * | U | 1380 | C | 1382 | C | 1383 | C | 1384 | cWW | cWW | cSW | ncSH | |
| 3 | IL_2AW7_054 | 2AW7 | 0.4767 | 0 | A | G | 1142 | G | 1143 | * | C | 1129 | A | 1130 | G | 1131 | C | 1132 | cWW | cWW | ncSW | ||
| 4 | IL_2QBG_003 | 2QBG | 0.5070 | 0 | A | C | 30 | C | 31 | * | G | 51 | A | 52 | A | 53 | G | 54 | cWW | cWW | ncSW | ||
| 5 | IL_1FJG_039 | 1FJG | 0.3878 | 1 | Minor groove platform (H) | A | A | 1044 | C | 1045 | * | G | 993 | C | 995 | A | 996 | U | 997 | cWW | cWW | cSW | |
| 6 | IL_3IWN_005 | 3IWN | 0.4094 | 0 | Minor groove platform | A | G | 71 | U | 72 | * | A | 51 | A | 52 | A | 53 | C | 54 | cWW | cWW | ncSW | ncSH |
| 7 | IL_4A1B_066 | 4A1B | 0.4496 | 2 | 1 | G | 1539 | U | 1541 | * | A | 1527 | A | 1529 | A | 1530 | C | 1531 | cWW | cWW | cSW | ||
| 8 | IL_2AW7_013 | 2AW7 | 0.4941 | 0 | A | G | 213 | C | 214 | * | G | 203 | G | 204 | A | 205 | C | 206 | cWW | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AAAC | 2 |
| GCA*UUCCC | 1 |
| GG*CAGC | 1 |
| CC*GAAG | 1 |
| AC*GACAU | 1 |
| GUU*AGAAC | 1 |
| GC*GGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 3 |
| C*UCC | 1 |
| *AG | 1 |
| *ACA | 1 |
| U*GAA | 1 |
| *GA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_73000.1 | Only in the parent motif |
|---|---|---|---|
| IL_70242.1 Compare | IL_1FJG_039, IL_2AW7_013, IL_2AW7_054, IL_2AW7_044, IL_2QBG_003 | IL_3IWN_005, IL_4A1B_066, IL_3UCZ_004 | IL_3O30_059, IL_2AW7_007, IL_3MUR_005, IL_2AW7_046 |
| IL_48709.1 Compare | IL_3IWN_005 | IL_1FJG_039, IL_2AW7_054, IL_2AW7_044, IL_2AW7_013, IL_4A1B_066, IL_2QBG_003, IL_3UCZ_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_73000.1 | Only in the child motif |
|---|---|---|---|
| IL_73000.2 Compare | IL_2AW7_054, IL_2AW7_044, IL_2AW7_013, IL_3IWN_005, IL_4A1B_066, IL_2QBG_003, IL_3UCZ_004 | IL_1FJG_039 | |
| IL_94430.2 Compare | IL_1FJG_039 | IL_2AW7_054, IL_2AW7_044, IL_2AW7_013, IL_3IWN_005, IL_4A1B_066, IL_2QBG_003, IL_3UCZ_004 | IL_3V2F_068, IL_2QBG_072, IL_2AW7_046, IL_3V2F_032, IL_3V2F_055, IL_2ZJR_105, IL_3Q1Q_003, IL_2ZJR_067, IL_2AW7_007, IL_2XXA_013, IL_1S72_066, IL_4A1B_086, IL_3U5H_145 |
- Annotations
-
- (6)
- Minor groove platform (H) (1)
- Minor groove platform (1)
- Basepair signature
- 06_cWW-cWW,cSW-cSH
- Heat map statistics
- Min 0.17 | Avg 0.37 | Max 0.69
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